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Protein Overview: CG8290-PB

General Information:
Name(s) found: CG8290-PB / FBpp0087147 [FlyBase]
Description(s) found:
Found 20 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG8290 (CG8290, FBgn0026573). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:7858179..7865236. It has the cytological map location 48D5. Based on sequence similarity, it is predicted to have molecular function</span>: general RNA polymerase II transcription factor activity. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1125 amino acids

    Gene Ontology:
    Cellular Component: nucleus [ISS]
    Biological Process: NONE FOUND
    Molecular Function: zinc ion binding [IEA]
    general RNA polymerase II transcription factor activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNSAPGSES GLAKVATPSP SPLAKLDADF TSSKFEMHPS LSDEERRFYL KMYPNVDLVN  60
   61 QRKVHCTVCK LHLGTAPAAE SNIKMHPILR VTHCVKCHDF YNSGEFSKGE DGSELYCRWC 120
  121 GQGGEVYCCS TCPYVFCKSC IVKNLSKGVI VDIEQNENWN CFSCTSKILW PLRAQHWALV 180
  181 NYLQTQKRAL QTLQLPEVEA RRQMLKDNSN CCRLAKSKTS SLSDSMESLE SNVSKRSQGS 240
  241 SAGSSKRGSM PKTIPPGPPS KRAKASNNEV VCTPDLLSML EPDCQLSVTP KPTGRQTVTA 300
  301 ANITTPRIVT VQQNYQPGQS SSNSGSNGSV SGSSSVPPTR SSLPPPLVLS GSGIRYRQNA 360
  361 PGGVSGVVRR TVVPNSVKTT GPVFHTINGF KVDLNSAAQQ DSYRLPNGRL IQVKRQVPQT 420
  421 IQPASTVPTP PTPPALVVPQ VGPGVVIRPR APITTNRPSL HISTYGSNMG IYNPQTNQQQ 480
  481 RAPQVRVGNA NPAPPPLQGL PPNANGGQTL MITPAPQPAP KVPTLVRLTF PNTPMGQARA 540
  541 QLQEQIFSAM DICTHLTGKV VSLTHSNAYN QVRSYLELKE LYIHMSYLMT YAIGRFKNLQ 600
  601 EKCLVDMREK GFKNDANSLE NGQLAAAVDY VCYGQLDDVD LFNTGCNSFH NQVYEYRKSL 660
  661 HANLKDGEDC EPLPPLMPLG VRAEGDPIDE PEEPETVPEP QQDDTEKDHE DAAEFDYDEP 720
  721 EDLDDDLDDD DLDNEECGEL GTEESMNRNE QAHAYDRKLT RLLREYPSLW CTRHPDYGKK 780
  781 EVTNKQWRVI ASHFPRGDDI KLRWKNVRKR YVRIERRLKQ GKRFKGYFDK ATNYLENRDR 840
  841 PRSEWLAVDC GEDDGDGFER KHLDVIENKM EQKAHKQPAV KINLKGGSRI PTRPLEVRPI 900
  901 DQRIITFAKS HPVLWRKSAD PEFNSIDEQT RKSLWQNFWK SAPNYACEYL VERWQQMYEM 960
  961 YKSFRLKSIK DKGIFANLEL KYSKYLASLY FLYKIDEQDL RDEFEPLQDC VPSGTDSAGN1020
 1021 LKDMPDDKQF CQQLVLAMRA YPTLWNPRHV DYSDVGARER LWPEVARRLP RFKRDAQACK1080
 1081 LRWQMAKFAY ECYLREMERH PRVNERKLQK LRSNFPLEEM RFLNI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..164] PSI-BLAST 39.30103 No description for 2jm1A was found.
    2 View Details [165..565] PSI-BLAST 7.0 No description for 1y0fB was found.
    3 View Details [566..674] deduced N/A No confident structure predictions are available.
    4 View Details [675..887] deduced N/A No confident structure predictions are available.
    5 View Details [888..995] deduced N/A No confident structure predictions are available.
    6 View Details [996..1125] MSA 1.002961 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle