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Protein Overview: FBpp0308553, CG1...

General Information:
Name(s) found: FBpp0308553 [FlyBase]
CG12340-PA / FBpp0087348 [FlyBase]
Description(s) found:
Found 26 descriptions.
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  • type=protein; loc=2R:complement(6688228..6688676,6688739..6689163,6689742..6693018,6693080..6693191); ID=FBpp0308553; name=wde-PB; parent=FBgn0027499,FBtr0339467; dbxref=FlyBase:FBpp0308553,FlyBase_Annotation_IDs:CG12340-PB; MD5=5191e18a354719863dbbcf3ae880e87b; length=1420; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG12340 (CG12340, FBgn0027499). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6687924..6696430. It has the cytological map location 47C1. Its molecular function is unknown. The biological processes in which it is involved are not known. 18 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 1420 amino acids

    Gene Ontology:
    Cellular Component: chromosome [IDA]
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGVNQTMEL KELSTEEALM RTLSTELGNE VEPLSTPAIL NESSQTSVDE VDLCELTNGV  60
   61 DSSDNVKVID KPKKISDRER NPGSDLDALL DKISSIVDCS PRNSDDIDSL DRDEECDSAS 120
  121 AKKRTAADTD ENLKEQREKP EEEEEGEEVL SSLEGEECID PDSELKTEEK LDETEEHASA 180
  181 KESTQKTEDL ADSDEILKSK EEDEVPANTA DNIEKDRKNT STDDVFMYAL DCISSADEFD 240
  241 AFASQDSKKA KPSKKLNTEN NSSVNDLEDI SSDDDDIIKE TEKPNTEVID LDSSSECVPC 300
  301 EAESEVEETE ANTEDTEVLT HGKVSTKKSL NLQNNISEKS ASAAEYESVK ADQHLTEGKE 360
  361 PMLVGDEVTE KSKESIPIQS EESIQVDEPE ESKESEELEE HKEKEEPDYC KETKDSEEAT 420
  421 EKEKSEIKII KASKVAQILG DTKEEEDPSP TQEVEDVKET EEPENKKEIE DTEELEEPVV 480
  481 IEGEETEDPQ KKVQKEFDVR TADHEMNYTT IDDKLDEAVK DVVEIEEKKA AEDELGVIPK 540
  541 GDKEPTTNGA CEISTDGNLK DLESNESTVV EEETKETESD DEVIFFEPLD KTENVGTTAN 600
  601 PTNENSVKPQ AKDDEVVLVS EDEDETPQNG ISEKEVQTIQ KETALKGLPN ESTTESVEAK 660
  661 NLQIDNSDNA CDQFEKLKTH DMVKQTTTED GNSNSSNLLR PAEYAEESVP KRLRLSTDEK 720
  721 NEFEAETNQE SLPILSRAEG GLKDVTKRSH EHLDSSPQEE IPNKKAKTED SDSNSSHEGT 780
  781 LQIDMGGQED KEESPKKDTQ KKLDFDLNPV PEIKQNVKPL RLEFFKTFRR SFDTMTRDDL 840
  841 EELVLQKVVE AMMVKSDFAE IRMQLDKCES TLANYRRKIA EVSKQFLDLE TVHKRVLKDL 900
  901 EAKNSHFTAP VRITRAVGLQ VGIPFKAIKP TVAAPESTHA AGSVLAPPSG TPPKASTSPT 960
  961 RATVRPRPPP PTFGPSTSSS ETGAGVSVTP NSNHQQQQPA ARSSQSLTTA SVTPPVRRGC1020
 1021 LQKVTPHRPV PTNLQPAPML MNQSSVQRLQ SSPPIAQRTM HASKHTGTPG STPSSVANAI1080
 1081 NKTVMRARNS EAAFLAQKQQ QKQHQQQQQQ QQQHLQQQQK QQQAQQQFLL PRPSPGPTPG1140
 1141 SSPAKQVPKC TTKVRAKQPP LSGATVSVPI SSSSSGSELG SYGQQQESSL APAKPKEKAV1200
 1201 IDLTDEDDAA AAAAARAAQA QNARLRMEML KRNAQTAAAT RGGRGGGNVV RASPMQLPRV1260
 1261 NARQIVHNNG GGQQSPLGSN VTMQIRSENT PPPASRLRYS HPAPLPTSPP QPFNPSWKVP1320
 1321 PSRPVIRISL LDTGIVISWT LEDSSPRFAE CVMYQIYAYQ ETINEPSTDS WRHVGDVSAM1380
 1381 LLPMAVTLNQ FQENQRYYFA VRGVDSHERF GPFSVPKTWS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..328] PSI-BLAST 14.0 Heavy meromyosin subfragment
    2 View Details [329..607] PSI-BLAST 5.69897 Tropomyosin
    3 View Details [608..818] deduced N/A No confident structure predictions are available.
    4 View Details [819..975] deduced N/A No confident structure predictions are available.
    5 View Details [976..1420] PSI-BLAST 11.39794 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle