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Protein Overview: RanBPM-PA

General Information:
Name(s) found: RanBPM-PA / FBpp0087358 [FlyBase]
Description(s) found:
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  • gi|24652438|ref|NP_724932.1| CG42236, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|21627531|gb|AAF58795.2| CG42236, isoform A [Drosophila melanogaster] [NCBI NR]
  • The gene Ran-binding protein M is referred to in FlyBase by the symbol Dmel\RanBPM (CG42236, FBgn0250861). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:6317217..6324088. It has the cytological map location 47A7. Based on sequence similarity, it is predicted to have molecular function</span>: Ran GTPase binding. There is experimental evidence that it is involved in the biological process</span>: ovarian follicle cell adhesion; germ-line stem-cell niche homeostasis; cytoskeleton organization; dorsal appendage formation. 9 alleles are reported. The phenotypes of these alleles are annotated with: terminal filament; ovary; germline stem cell; germarium cap cell; egg chamber. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG11763-PA translation from_gene[CG11763 CG11763 FBgn0033522] seq_release:3 mol_weight=106441 cds_boundaries:(2R:5,491,219..5,495,852[+]) aa_length:960 transcript_info:[CG11763-RA seq_release:3] gene_info:[gene symbol:CG11763 FBgn0033522 gene_boundari [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V5L1) CG11763 protein [DrosMelano7227.FASTAC.txt]
  • CG11763-PA, isoform A [Drosophila melanogaster]gi|24652438|ref|NP_724932.1| CG11763-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:join(6318091..6319420,6320544..6320708,6320780..6320970,6321047..6321228,6321292..6321404,6321466..6321617,6321676..6321878,6321932..6322095,6322157..6322290,6322423..6322534,6322591..6322727); ID=FBpp0087358; name=CG42236-PA; parent= [fly-100309-contam.fasta]
  • midlife-crisis CG11763-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG11763-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:join(6318091..6319420,6320544..6320708,6320780..6320970,6321047..6321228,6321292..6321404,6321466..6321617,6321676..6321878,6321932..6322095,6322157..6322290,6322423..6322534,6322591..6322727); ID=FBpp0087358; name=CG42236-PA; parent=FBgn0250861,FBtr0088263; dbxref=FlyBase:FBpp0087358,GB_protein:AAF58795.2,FlyBase_Annotation_IDs:CG11763-PA,FlyBase_Annotation_IDs:CG42236-PA,REFSEQ:NP_724932,GB_protein:AAF58795; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:join(6318091..6319420,6320544..6320708,6320780..6320970,6321047..6321228,6321292..6321404,6321466..6321617,6321676..6321878,6321932..6322095,6322157..6322290,6322423..6322534,6322591..6322727); ID=FBpp0087358; name=RanBPM-PA; parent=FBgn0250861,FBtr0088263; dbxref=FlyBase:FBpp0087358,GB_protein:AAF58795.2,FlyBase_Annotation_IDs:CG11763-PA,FlyBase_Annotation_IDs:CG42236-PA,REFSEQ:NP_724932,GB_protein:AAF58795; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Isoform A of Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:join(6318091..6319420,6320544..6320708,6320780..6320970,6321047..6321228,6321292..6321404,6321466..6321617,6321676..6321878,6321932..6322095,6322157..6322290,6322423..6322534,6322591..6322727); ID=FBpp0087358; name=RanBPM-PA; parent=FBgn0262114,FBtr0088263; dbxref=FlyBase:FBpp0087358,GB_protein:AAF58795.2,FlyBase_Annotation_IDs:CG11763-PA,FlyBase_Annotation_IDs:CG42236-PA,REFSEQ:NP_724932,GB_protein:AAF58795,FlyMine:FBpp0087358,modMine:FBpp0087358; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435222); ID=FBpp0087358; name=RanBPM-PA; parent=FBgn0262114,FBtr0088263; dbxref=FlyBase:FBpp0087358,GB_protein:AAF58795.2,FlyBase_Annotation_IDs:CG11763-PA,FlyBase_Annotation_IDs:CG42236-PA,REFSEQ:NP_724932,GB_protein:AAF58795,FlyMine:FBpp0087358,modMine:FBpp0087358; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435723); ID=FBpp0312425; name=RanBPM-PG; parent=FBgn0262114,FBtr0346961; dbxref=FlyBase:FBpp0312425,FlyBase_Annotation_IDs:CG42236-PG; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435222); ID=FBpp0087358; name=RanBPM-PA; parent=FBgn0262114,FBtr0088263; dbxref=FlyBase:FBpp0087358,GB_protein:AAF58795.2,FlyBase_Annotation_IDs:CG11763-PA,FlyBase_Annotation_IDs:CG42236-PA,REFSEQ:NP_724932,GB_protein:AAF58795,FlyMine:FBpp0087358,modMine:FBpp0087358; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435723); ID=FBpp0312425; name=RanBPM-PG; parent=FBgn0262114,FBtr0346961; dbxref=FlyBase:FBpp0312425,FlyBase_Annotation_IDs:CG42236-PG; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q4Z8K6, Isoform A of Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM [DROME.fasta.20160308]
  • FBpp0087358 type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435222); ID=FBpp0087358; name=RanBPM-PA; parent=FBgn0262114,FBtr0088263; dbxref=FlyBase:FBpp0087358,GB_protein:AAF58795.2,FlyBase_Annotation_IDs:CG11763-PA,FlyBase_Annotation_IDs:CG42236-PA,REFSEQ:NP_724932,GB_protein:AAF58795,FlyMine:FBpp0087358,modMine:FBpp0087358; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0312425 type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435723); ID=FBpp0312425; name=RanBPM-PG; parent=FBgn0262114,FBtr0346961; dbxref=FlyBase:FBpp0312425,FlyBase_Annotation_IDs:CG42236-PG,REFSEQ:NP_001303342,GB_protein:ALI30172; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435222); ID=FBpp0087358; name=RanBPM-PA; parent=FBgn0262114,FBtr0088263; dbxref=FlyBase:FBpp0087358,GB_protein:AAF58795.2,FlyBase_Annotation_IDs:CG11763-PA,FlyBase_Annotation_IDs:CG42236-PA,REFSEQ:NP_724932,GB_protein:AAF58795,FlyMine:FBpp0087358,modMine:FBpp0087358; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:join(10430586..10431915,10433039..10433203,10433275..10433465,10433542..10433723,10433787..10433899,10433961..10434112,10434171..10434373,10434427..10434590,10434652..10434785,10434918..10435029,10435086..10435723); ID=FBpp0312425; name=RanBPM-PG; parent=FBgn0262114,FBtr0346961; dbxref=FlyBase:FBpp0312425,FlyBase_Annotation_IDs:CG42236-PG,REFSEQ:NP_001303342,GB_protein:ALI30172,UniProt/TrEMBL:A0A126GUM4; MD5=15ea2f3cb5680e19fb74cf5a599eb83a; length=960; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 960 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENVEEAPPL SSESNSNSNN SSASSSSHQL SQSGAMGAEI APSTSRSHSH SPTPSPPVPA  60
   61 SSHDQPHPDH PSPPLNASET EARENSPHDH SPTPTFHQTA PPPTTSSTAP QRDEREQQQQ 120
  121 QEAPPLQQDQ QENSPAQDQE LHPLLDQQNQ EYPAVHQDQQ AEQNQELHHI EGLIRHRESQ 180
  181 NPEEHPPQAS LENRETLGRE DTNQEPDEPQ VRDPEIEPEA EPPPPLLLED LDEQDSGSQD 240
  241 LNEQQPPLII DANAIAETID ANAVERIDDY EDDDEEVDEE EEVVEDRVDR AGEVASVSGA 300
  301 QRLHSVAVLP RYSSASRAPR SSNNNNNNIS NHNNNNNNSN SNSLSRRTRH FYSNNGSHFS 360
  361 NDMFPSHNPR SSTQTSSPRV GGRRHHSTPA ASSNSPQHQG VDPLRLLYPN VNESETPLPR 420
  421 CWSPHDKCLS IGLSQNNLRV TYKGVGKQHS DAASVRTAYP IPSSCGLYYF EVRIISKGRN 480
  481 GYMGIGLTAQ QFRMNRLPGW DKQSYGYHGD DGNSFSSSGN GQTYGPTFTT GDVIGCCVNF 540
  541 VNNTCFYTKN GVDLGIAFRD LPTKLYPTVG LQTPGEEVDA NFGQEPFKFD KIVDMMKEMR 600
  601 SNVLRKIDRY PHLLETPENL MNRLVSTYLV HNAFSKTAEA FNGYTNQTFN EDLASIKTRQ 660
  661 KIIKLILTGK MSQAIEHTLR SFPGLLENNK NLWFALKCRQ FIEMINGADI ENVNNKVTAT 720
  721 TQTMPTNQTS VIQSTKTFKH SKSGSGNGNV NINQTQQQNN TAIPAVIKPQ GGDRPDIKNM 780
  781 LVDDNSNKCV EHDSNSMDVE MEPCQSHSNG GDSSSNGNAS AVRNSLDAID EEMDVSPSSR 840
  841 NCGRVIEKIL EFGKELSSMG QQLEKENLMT EEERQMLEDA FSLIAYSNPW SSPLGWLLCP 900
  901 SRRESVSTTL NSAILESLNF ERRPPLEYLV AHASELIKVI GQHSLGEDAF ITIDDVFPQN 960
  961

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..241] MSA 7.232997 View MSA. No confident structure predictions are available.
    2 View Details [242..396] deduced N/A No confident structure predictions are available.
    3 View Details [397..623] PSI-BLAST 38.09691 No description for 2fnjA was found.
    4 View Details [624..794] deduced N/A No confident structure predictions are available.
    5 View Details [795..960] MSA 5.043977 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

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