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Protein Overview: shrb-PA

General Information:
Name(s) found: shrb-PA / FBpp0087704 [FlyBase]
Description(s) found:
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  • gi|28573949|ref|NP_610462.3| shrub [Drosophila melanogaster] [NCBI NR]
  • gi|28381065|gb|AAF58977.2| shrub [Drosophila melanogaster] [NCBI NR]
  • gi|17861598|gb|AAL39276.1| GH13992p [Drosophila melanogaster] [NCBI NR]
  • The gene shrub is referred to in FlyBase by the symbol Dmel\shrb (CG8055, FBgn0086656). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:5029651..5031415. It has the cytological map location 45A12-45E. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process</span>: dendrite morphogenesis; negative regulation of growth or development of symbiont in host. 12 alleles are reported. The phenotypes of these alleles are annotated with: eye; dorsal multidendritic neuron ddaE; dorsal cluster neuron. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG8055-PA translation from_gene[CG8055 CG8055 FBgn0033385] seq_release:3 mol_weight=25444 cds_boundaries:(2R:4,203,365..4,204,544[-]) aa_length:226 transcript_info:[CG8055-RA seq_release:3] gene_info:[gene symbol:CG8055 FBgn0033385 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q8T0Q4) GH13992p (CG8055-PA) [DrosMelano7227.FASTAC.txt]
  • CG8055-PA [Drosophila melanogaster]gi|17861598|gb|AAL39276.1| GH13992p [Drosophila melanogaster]gi|28573949|ref|NP_610462.3| CG8055-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(5030120..5030160,5030222..5030505,5030564..5030741,5031125..5031302); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP [fly-100309-contam.fasta]
  • Vps32 CG8055-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG8055-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH13992p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(5030120..5030160,5030222..5030505,5030564..5030741,5031125..5031302); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP_610462,GB_protein:AAF58977; MD5=99a6da738faeb6a43409910b700b35da; length=226; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(5030120..5030160,5030222..5030505,5030564..5030741,5031125..5031302); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP_610462,GB_protein:AAF58977; MD5=99a6da738faeb6a43409910b700b35da; length=226; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • GH13992p OS=Drosophila melanogaster GN=shrb PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(5030120..5030160,5030222..5030505,5030564..5030741,5031125..5031302); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP_610462,GB_protein:AAF58977,FlyMine:FBpp0087704,modMine:FBpp0087704; MD5=99a6da738faeb6a43409910b700b35da; length=226; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • GH13992p OS=Drosophila melanogaster GN=shrb PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:complement(join(9143620..9143797,9143059..9143236,9142717..9143000,9142615..9142655)); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP_610462,GB_protein:AAF58977,FlyMine:FBpp0087704,modMine:FBpp0087704; MD5=99a6da738faeb6a43409910b700b35da; length=226; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(9143620..9143797,9143059..9143236,9142717..9143000,9142615..9142655)); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP_610462,GB_protein:AAF58977,FlyMine:FBpp0087704,modMine:FBpp0087704; MD5=99a6da738faeb6a43409910b700b35da; length=226; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0087704 type=protein; loc=2R:complement(join(9143620..9143797,9143059..9143236,9142717..9143000,9142615..9142655)); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP_610462,GB_protein:AAF58977,FlyMine:FBpp0087704,modMine:FBpp0087704; MD5=99a6da738faeb6a43409910b700b35da; length=226; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(9143620..9143797,9143059..9143236,9142717..9143000,9142615..9142655)); ID=FBpp0087704; name=shrb-PA; parent=FBgn0086656,FBtr0088623; dbxref=FlyBase:FBpp0087704,FlyBase_Annotation_IDs:CG8055-PA,GB_protein:AAF58977.2,REFSEQ:NP_610462,GB_protein:AAF58977,UniProt/TrEMBL:Q8T0Q4,FlyMine:FBpp0087704,modMine:FBpp0087704; MD5=99a6da738faeb6a43409910b700b35da; length=226; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein transport [IEA]
    dendrite morphogenesis [IMP]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFGKMFGG KKEVAPTTGE AIQKLRETEN MLIKKQEFLE AKIEDELNIA RKNASKNKRV  60
   61 ALQALKKKKR LEKQLQQIDG TLSTIEMQRE ALESANTNTA VLTTMKNAAD ALKRAHQNMD 120
  121 VDKVHDMMDD IAEQQDVARE ISDAISNPVA FGADLDDEDL ERELDELEQE NFDKEIIGIP 180
  181 EPTPTLPEAP TEDLPEKAKE KKKATTTTAV EDDDDPDMKQ LLSWSN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 19.0 No description for 2gd5A was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

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