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Protein Overview: CG8078-PA

General Information:
Name(s) found: CG8078-PA / FBpp0087712 [FlyBase]
Description(s) found:
Found 21 descriptions.
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  • This gene is referred to in FlyBase by the symbol Dmel\CG8078 (CG8078, FBgn0033375). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:4984436..4985972. It has the cytological map location 45A3. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: ATP binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process</span>: tRNA processing. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 343 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA processing [IEA]
    Molecular Function: ATP binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHIICKSQCG NRAALKRPKT GDALCKECFF AAFEAEIHHT ISSSNLFRRG EKVAVAASGG  60
   61 KDSTVLAHVL KLLNERHNYG LELVLLSIDE GITGYRDDSL ETVKQNRDDY QMPLKILSYE 120
  121 ELYGWTMDRI VAQIGRSNNC TFCGVFRRQA LDRGAKLLGV DSIATGHNAD DIAETVLMNV 180
  181 LRGDTARLRR CTSIRTGGGE DTIPRVKPLK YSYEKEIVMY AHYKKLVYFS TECVFAPNAY 240
  241 RGHARAFLKD LEKVRPSVIM DIIYSGEQLR FKDTVKKPER GTCTRCGFVS SQQPCKACVL 300
  301 LEGLNRGLPK LGIGKKSKGE RMIAKQNQEL ALRERANLVK NDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..343] PSI-BLAST 60.39794 GMP synthetase; GMP synthetase, central domain; GMP synthetase C-terminal dimerisation domain

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • ligase activity, forming carbon-nitrogen bonds
    		•  4.5241303311086 bayes_pls_golite062009
  • ligase activity
    		•  3.71561290487771 bayes_pls_golite062009
  • DNA binding
    		•  1.07561751049838 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.0681685328021 bayes_pls_golite062009
  • binding
    		•  0.915602461727954 bayes_pls_golite062009
  • catalytic activity
    		•  0.828867994386867 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  0.475055910258246 bayes_pls_golite062009
  • transferase activity
    		•  0.0776944314618701 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle