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Protein Overview: FBpp0307870, CG1...

General Information:
Name(s) found: FBpp0307870 [FlyBase]
CG1600-PB / FBpp0088032 [FlyBase]
CG1600-PA / FBpp0088030 [FlyBase]
Description(s) found:
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  • gi|7304199|gb|AAF59235.1| CG1600, isoform A [Drosophila melanogaster] [NCBI NR]
  • gi|7304198|gb|AAF59234.1| CG1600, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|24586287|ref|NP_724573.1| CG1600, isoform B [Drosophila melanogaster] [NCBI NR]
  • gi|24586285|ref|NP_724572.1| CG1600, isoform A [Drosophila melanogaster] [NCBI NR]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0307870; name=Drat-PD; parent=FBgn0033188,FBtr0336939; dbxref=REFSEQ:NP_001260779,GB_protein:AGB93312,FlyBase:FBpp0307870,FlyBase_Annotation_IDs:CG1600-PD; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r5.56; species=Dmel; [FlyBase]
  • This gene is referred to in FlyBase by the symbol Dmel\CG1600 (CG1600, FBgn0033188). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:3413623..3420487. It has the cytological map location 43D2-43D3. An electronic pipeline based on InterPro domains suggests that it has the molecular function</span>: oxidoreductase activity; zinc ion binding. There is experimental evidence that it is involved in the biological process</span>: response to hypoxia. 6 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. [FlyBase]
  • >CG1600-PB translation from_gene[CG1600 CG1600 FBgn0033188] seq_release:3 mol_weight=41388 cds_boundaries:(2R:2,587,559..2,588,768[-]) aa_length:381 transcript_info:[CG1600-RB seq_release:3] gene_info:[gene symbol:CG1600 FBgn0033188 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • >CG1600-PA translation from_gene[CG1600 CG1600 FBgn0033188] seq_release:3 mol_weight=41388 cds_boundaries:(2R:2,587,559..2,588,768[-]) aa_length:381 transcript_info:[CG1600-RA seq_release:3] gene_info:[gene symbol:CG1600 FBgn0033188 gene_boundaries:(2R [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9V4N2) CG1600 protein [DrosMelano7227.FASTAC.txt]
  • (AE003840) CG1600 gene product [alt 2] [Drosophila melanogaster] [yeastflysequest.fasta]
  • (AE003840) CG1600 gene product [alt 1] [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG1600-PB, isoform B [Drosophila melanogaster]gi|7304199|gb|AAF59235.1| CG1600-PA, isoform A [Drosophila melanogaster]gi|24586287|ref|NP_724573.1| CG1600-PB [Drosophila melanogaster]gi|24586285|ref|NP_724572.1| CG1600-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088030; name=CG1600-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235; MD5 [fly-100309-contam.fasta]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088032; name=CG1600-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234; MD5 [fly-100309-contam.fasta]
  • CG1600-PA, isoform A [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG1600-PB, isoform B [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088030; name=CG1600-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088032; name=CG1600-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088030; name=CG1600-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088032; name=CG1600-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG1600, isoform A OS=Drosophila melanogaster GN=CG1600 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088030; name=CG1600-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235,FlyMine:FBpp0088030,modMine:FBpp0088030; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2R:complement(3414160..3414577,3414645..3415372); ID=FBpp0088032; name=CG1600-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG1600, isoform A OS=Drosophila melanogaster GN=CG1600 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088030; name=Drat-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235,FlyMine:FBpp0088030,modMine:FBpp0088030; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088032; name=Drat-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0307870; name=Drat-PD; parent=FBgn0033188,FBtr0336939; dbxref=REFSEQ:NP_001260779,GB_protein:AGB93312,FlyBase:FBpp0307870,FlyBase_Annotation_IDs:CG1600-PD; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088030; name=Drat-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235,FlyMine:FBpp0088030,modMine:FBpp0088030; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088032; name=Drat-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0307870; name=Drat-PD; parent=FBgn0033188,FBtr0336939; dbxref=REFSEQ:NP_001260779,GB_protein:AGB93312,FlyBase:FBpp0307870,FlyBase_Annotation_IDs:CG1600-PD; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q961L4, CG1600-PA OS=Drosophila melanogaster GN=Drat PE=1 SV=1 [DROME.fasta.20160308]
  • FBpp0088030 type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088030; name=Drat-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235,FlyMine:FBpp0088030,modMine:FBpp0088030; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0088032 type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088032; name=Drat-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0307870 type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0307870; name=Drat-PD; parent=FBgn0033188,FBtr0336939; dbxref=REFSEQ:NP_001260779,GB_protein:AGB93312,FlyBase:FBpp0307870,FlyBase_Annotation_IDs:CG1600-PD; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088030; name=Drat-PA; parent=FBgn0033188,FBtr0088956; dbxref=GB_protein:AAF59235.1,FlyBase:FBpp0088030,FlyBase_Annotation_IDs:CG1600-PA,REFSEQ:NP_724572,GB_protein:AAF59235,UniProt/TrEMBL:Q0E9G4,FlyMine:FBpp0088030,modMine:FBpp0088030; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0088032; name=Drat-PB; parent=FBgn0033188,FBtr0088958; dbxref=GB_protein:AAF59234.1,FlyBase:FBpp0088032,FlyBase_Annotation_IDs:CG1600-PB,REFSEQ:NP_724573,GB_protein:AAF59234,UniProt/TrEMBL:Q0E9G4; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2R:complement(join(7527140..7527867,7526655..7527072)); ID=FBpp0307870; name=Drat-PD; parent=FBgn0033188,FBtr0336939; dbxref=REFSEQ:NP_001260779,GB_protein:AGB93312,FlyBase:FBpp0307870,FlyBase_Annotation_IDs:CG1600-PD,UniProt/TrEMBL:Q0E9G4; MD5=8060de12cb056e5d17932a3e7047797b; length=381; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 381 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: response to hypoxia [IEP][IMP]
    oxidation reduction [IEA]
    Molecular Function: zinc ion binding [IEA]
    oxidoreductase activity [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLCRQVSI ESPGPGAKNC VFNFFVPIED TPALGARIRI VCAGACYRRR DRANSITSMS  60
   61 SVSSELSDYC PSVNSMSSPA HQGIREGSFF PGFEVAGVIE SLGSEITEAN NRGLRIGQRV 120
  121 IVYPFDETPA GYAELLVVPD LKHVVPIPDS LPMEVAAMLP TGALLAWNAV FKAQAVVTQI 180
  181 LSQRAATEPK RKPKILIVGT GGLALWAVRI ASYHFATTGA DNVDITVASL RDEGFRLATE 240
  241 IKNVSVVQWN ECLYEPQLIE RTKDVCGGAV DVVIDFGTTS RSLHRSMHCL SKGGVVLISD 300
  301 EVAEKLLPKF SRLSEQYQQE IIAISNGTAE QLAELVELVA NKKIEPPPHS VFPCEQAAEV 360
  361 IAKLCNSEIP GRAILRFHDI E

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..381] PSI-BLAST 71.69897 CRYSTAL STRUCTURE OF NAD(+)-DEPENDENT ALCOHOL DEHYDROGENASE FROM BACILLUS STEAROTHERMOPHILUS STRAIN LLD-R

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.93258555725042 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.881088609158401 bayes_pls_golite062009
  • chaperone binding
    		•  0.0365779597193233 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle