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Protein Overview: vlc-PA, FBpp0300...

General Information:
Name(s) found: FBpp0300187 [FlyBase]
FBpp0300186 [FlyBase]
FBpp0300185 [FlyBase]
vlc-PF / FBpp0289730 [FlyBase]
vlc-PE / FBpp0289729 [FlyBase]
vlc-PC / FBpp0085377 [FlyBase]
vlc-PA / FBpp0085375 [FlyBase]
Description(s) found:
Found 72 descriptions.
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  • type=protein; loc=2R:join(1590383..1590452,1590556..1591721,1591791..1591887,1591940..1592424); ID=FBpp0300187; name=vlc-PI; parent=FBgn0259978,FBtr0307532; dbxref=REFSEQ:NP_724426,GB_protein:AAM68355,FlyBase:FBpp0300187,FlyBase_Annotation_IDs:CG8390-PI; MD5=126da9d2d57c466485bfde077bfd6600; length=605; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=2R:join(1590383..1590452,1590556..1591721,1591791..1591887,1591940..1592424); ID=FBpp0300186; name=vlc-PH; parent=FBgn0259978,FBtr0307531; dbxref=REFSEQ:NP_001246143,GB_protein:AFH07898,FlyBase:FBpp0300186,FlyBase_Annotation_IDs:CG8390-PH; MD5=126da9d2d57c466485bfde077bfd6600; length=605; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=2R:join(1590383..1590452,1590556..1591721,1591791..1591887,1591940..1592424); ID=FBpp0300185; name=vlc-PG; parent=FBgn0259978,FBtr0307530; dbxref=REFSEQ:NP_001246142,GB_protein:AFH07897,FlyBase:FBpp0300185,FlyBase_Annotation_IDs:CG8390-PG; MD5=126da9d2d57c466485bfde077bfd6600; length=605; release=r5.56; species=Dmel; [FlyBase]
  • The gene vulcan is referred to in FlyBase by the symbol Dmel\vlc (CG8390, FBgn0259978). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:1589612..1592944. It has the cytological map location 41F9-41F8. Its molecular function is unknown. It is reported to be involved in the biological process</span>: imaginal disc-derived leg morphogenesis. 11 alleles are reported. The phenotypes of these alleles are annotated with: metathoracic tarsal segment 2; leg; wing; metathoracic tibia. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • The gene vulcan is referred to in FlyBase by the symbol Dmel\vlc (CG8390, FBgn0259978). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:1589612..1592944. It has the cytological map location 41F9-41F8. Its molecular function is unknown. It is reported to be involved in the biological process</span>: imaginal disc-derived leg morphogenesis. 11 alleles are reported. The phenotypes of these alleles are annotated with: metathoracic tarsal segment 2; leg; wing; metathoracic tibia. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • The gene vulcan is referred to in FlyBase by the symbol Dmel\vlc (CG8390, FBgn0259978). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:1589612..1592944. It has the cytological map location 41F9-41F8. Its molecular function is unknown. It is reported to be involved in the biological process</span>: imaginal disc-derived leg morphogenesis. 11 alleles are reported. The phenotypes of these alleles are annotated with: metathoracic tarsal segment 2; leg; wing; metathoracic tibia. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
  • The gene vulcan is referred to in FlyBase by the symbol Dmel\vlc (CG8390, FBgn0259978). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2R:1589612..1592944. It has the cytological map location 41F9-41F8. Its molecular function is unknown. It is reported to be involved in the biological process</span>: imaginal disc-derived leg morphogenesis. 11 alleles are reported. The phenotypes of these alleles are annotated with: metathoracic tarsal segment 2; leg; wing; metathoracic tibia. It has 6 annotated transcripts and 6 annotated polypeptides. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 605 amino acids

    Gene Ontology:
    Cellular Component: septate junction [ISS]
    Biological Process: imaginal disc-derived leg morphogenesis [NAS]
    cell-cell signaling [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRSLDSIGS CSLDVDADSS DISDTSGSLN FPTPVSVRDI TREFTANLRE RCVPNLPPQP  60
   61 QHKTPAYVES RSSELEHMVL SPAIVECDQE PSSNDFDETS AENSQEAPEK KPSYLNLACC 120
  121 VNGYSNLTTY DSKIRQDINK SREVSPIRPS TSSLQYCKRN HFLATPTLHS MPSPATKCKP 180
  181 IEPNNNSNDS SGNFSSGSGH SNGNGSFIKQ RVERLYGPGA LAQGFYSPKK HGQSPSNAAG 240
  241 RSERGQVEID SLQGSELARK FKQLSPSKDY GEFRKKMQKK CSQSTTARID EPLHSPGLNG 300
  301 DLDLPVFRHL SQEFRAQLPT VSPKRGAPRS CMAPDVLLVD NESSPDHGPT DEVDHESTKM 360
  361 DKLASEEYIS TSNISVEAVV KDGNFFLKIL KEEQSRLLVL AALAEKYADA LSTNPDISED 420
  421 TFGLLRSASG KARLLVSQKM KQFEGLCHNN LNRSPEDKFP TTLDDLQGFW DMVYLQVEHV 480
  481 DSIFADIEKL KSNDWKVKAQ SVADQPDLHT IPTKTIKPSK VGVSQVKTVG KASSVRVNGS 540
  541 APPPPNSAAA LKREAQRKLL LEMKRQRREA MTAAAKLNPI NVDADPDVPG IIGDSCANPS 600
  601 VSNGS

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..111] deduced N/A No confident structure predictions are available.
    2 View Details [112..277] MSA 7.139996 View MSA. No confident structure predictions are available.
    3 View Details [278..379] deduced N/A No confident structure predictions are available.
    4 View Details [380..492] MSA 2.122975 View MSA. No confident structure predictions are available.
    5 View Details [493..605] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle