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Protein Overview: FBpp0300958, FBp...

General Information:
Name(s) found: FBpp0300958 [FlyBase]
FBpp0300957 [FlyBase]
ref2-PA / FBpp0079958 [FlyBase]
Description(s) found:
Found 33 descriptions.
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  • type=protein; loc=2L:complement(12610719..12611381); ID=FBpp0300958; name=Ref2-PC; parent=FBgn0032439,FBtr0308801; dbxref=FlyBase:FBpp0300958,FlyBase_Annotation_IDs:CG17031-PC,REFSEQ:NP_001246008,GB_protein:AFH03682; MD5=126355bfcf269ed8da00671024824113; length=220; release=r5.56; species=Dmel; [FlyBase]
  • type=protein; loc=2L:complement(12610719..12611381); ID=FBpp0300957; name=Ref2-PB; parent=FBgn0032439,FBtr0308800; dbxref=FlyBase:FBpp0300957,FlyBase_Annotation_IDs:CG17031-PB,REFSEQ:NP_001246007,GB_protein:AFH03681; MD5=126355bfcf269ed8da00671024824113; length=220; release=r5.56; species=Dmel; [FlyBase]
  • The gene ref2 is referred to in FlyBase by the symbol Dmel\ref2 (CG17031, FBgn0032439). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:12610515..12611451. It has the cytological map location 33F1. Based on sequence similarity, it is predicted to have molecular function</span>: mRNA binding. It is reported to be involved in the biological process</span>: mRNA export from nucleus. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 220 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: mRNA export from nucleus [NAS]
    Molecular Function: nucleotide binding [IEA]
    nucleic acid binding [IEA]
    mRNA binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDKMKMSLD DIIKMKFNKN KFVNAKNERV QGGSIRKRNS EGGLRGIQRS RNGTGFIRKS  60
   61 KFKQETLLKP PKKPTLVMVC NLDYGVDDDD IMELFNQDGV VEKGFVHYDR DGNSLGTAHL 120
  121 SFKYREEAFQ IIEQFHGVRL DGRRLKLHLV QNTRNFKRTD VDDLSLRMGS FKTRFLQNGT 180
  181 FKTRSLQNGF QKSRLFRNSS FKPRPFKKHN FKSRAFDTDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..73] PSI-BLAST 24.221849 No description for 2f3jA was found.
    2 View Details [74..220] PSI-BLAST 33.0 HNRNP A1 (RBD1,2) FROM HOMO SAPIENS

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • nucleic acid binding
    		•  2.34356093608328 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle