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Protein Overview: CG6443-PA

General Information:
Name(s) found: CG6443-PA / FBpp0079699 [FlyBase]
Description(s) found:
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  • gi|7297747|gb|AAF52998.1| CG6443 [Drosophila melanogaster] [NCBI NR]
  • gi|19921112|ref|NP_609443.1| CG6443 [Drosophila melanogaster] [NCBI NR]
  • gi|17862628|gb|AAL39791.1| LD41227p [Drosophila melanogaster] [NCBI NR]
  • This gene is referred to in FlyBase by the symbol Dmel\CG6443 (CG6443, FBgn0032290). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:10728975..10730302. It has the cytological map location 32A5. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG6443-PA translation from_gene[CG6443 CG6443 FBgn0032290] seq_release:3 mol_weight=33655 cds_boundaries:(2L:10,721,649..10,722,608[+]) aa_length:299 transcript_info:[CG6443-RA seq_release:3] gene_info:[gene symbol:CG6443 FBgn0032290 gene_boundaries:( [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VKR2) CG6443 protein (LD41227p) [DrosMelano7227.FASTAC.txt]
  • (AE003629) CG6443 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG6443-PA [Drosophila melanogaster]gi|17862628|gb|AAL39791.1| LD41227p [Drosophila melanogaster]gi|19921112|ref|NP_609443.1| CG6443-PA [Drosophila melanogaster] [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998; MD5=9 [fly-100309-contam.fasta]
  • CG6443-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • LD41227p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998; MD5=9e309ad802e5be676f23ad1b4a79b770; length=299; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998; MD5=9e309ad802e5be676f23ad1b4a79b770; length=299; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • CG6443 OS=Drosophila melanogaster GN=CG17118 PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998,FlyMine:FBpp0079699,modMine:FBpp0079699; MD5=9e309ad802e5be676f23ad1b4a79b770; length=299; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • CG6443 OS=Drosophila melanogaster GN=CG17118 PE=2 SV=1 [UniProt_D_Melanogaster_07132012_07-13-2012_reversed.fasta]
  • type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998,FlyMine:FBpp0079699,modMine:FBpp0079699; MD5=9e309ad802e5be676f23ad1b4a79b770; length=299; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998,FlyMine:FBpp0079699,modMine:FBpp0079699; MD5=9e309ad802e5be676f23ad1b4a79b770; length=299; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • FBpp0079699 type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998,FlyMine:FBpp0079699,modMine:FBpp0079699; MD5=9e309ad802e5be676f23ad1b4a79b770; length=299; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:join(10729240..10729308,10729372..10730202); ID=FBpp0079699; name=CG6443-PA; parent=FBgn0032290,FBtr0080110; dbxref=FlyBase:FBpp0079699,FlyBase_Annotation_IDs:CG6443-PA,GB_protein:AAF52998.1,REFSEQ:NP_609443,GB_protein:AAF52998,UniProt/TrEMBL:Q9VKR2,FlyMine:FBpp0079699,modMine:FBpp0079699; MD5=9e309ad802e5be676f23ad1b4a79b770; length=299; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 299 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGCDGGTIPR RDELVRVKQK PEQKDKDAER EFRWRHCTLT QQSLQEPIAM CGMGRLYSKQ  60
   61 SVIERLLEKE PMPETAAHVK SMKDIRQLNP TPNPAFTEED KTEGLLDTRH SPYICKLIGL 120
  121 EMSGKFRFVA LWSCGCVLSE RALKQIKGSV ASTCPLCQAA YSVEDVVVLN GNEEDMELMR 180
  181 VKMEMRAAKR KSSKKDKKSA KKVEVKAEPA EEQEPVASTS KAAAAEKPTT STKTKAVAPV 240
  241 KRLGAVNAMQ DPELKRLKSD FSVAKDPKAS DVYKSLFTSH KTEKDQERAH WVTYNPFYN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..84] FFAS03 1.19 Solution structure of the U-box in human ubiquitin conjugation factor E4A
    2 View Details [85..209] PSI-BLAST 10.522879 No description for 2cklB was found.
    3 View Details [210..299] MSA 2.190994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  1.60928341417249 bayes_pls_golite062009
  • protein binding
    		•  1.13053895005339 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle