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Protein Overview: baf-PA, FBpp0305308

General Information:
Name(s) found: FBpp0305308 [FlyBase]
baf-PA / FBpp0079157 [FlyBase]
Description(s) found:
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  • gi|7297331|gb|AAF52592.1| barrier to autointegration factor [Drosophila melanogaster] [NCBI NR]
  • gi|42415437|gb|AAS15688.1| GH06291p [Drosophila melanogaster] [NCBI NR]
  • gi|22095479|sp|Q9VLU0.1|BAF_DROME RecName: Full=Barrier-to-autointegration factor [NCBI NR]
  • gi|20129349|ref|NP_609176.1| barrier to autointegration factor [Drosophila melanogaster] [NCBI NR]
  • Barrier-to-autointegration factor OS=Drosophila melanogaster GN=baf PE=3 SV=1 [Swiss-Prot]
  • BAF-like protein CG7380 - Drosophila melanogaster (Fruit fly) [Swiss-Prot]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0305308; name=baf-PB; parent=FBgn0031977,FBtr0333095; dbxref=REFSEQ:NP_001260220,GB_protein:AGB92756,FlyBase:FBpp0305308,FlyBase_Annotation_IDs:CG7380-PB; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r5.56; species=Dmel; [FlyBase]
  • The gene barrier to autointegration factor is referred to in FlyBase by the symbol Dmel\baf (CG7380, FBgn0031977). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:8029464..8030150. It has the cytological map location 28D3. It is reported to have molecular function</span>: DNA binding. There is experimental evidence that it is involved in the biological process</span>: karyosome formation. 6 alleles are reported. The phenotypes of these alleles are annotated with: nuclear envelope; condensed nuclear chromosome; nuclear chromatin; karyosome; imaginal disc; larval central nervous system. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG7380-PA translation from_gene[CG7380 CG7380 FBgn0031977] seq_release:3 mol_weight=10117 cds_boundaries:(2L:8,021,839..8,022,190[+]) aa_length:90 transcript_info:[CG7380-RA seq_release:3] gene_info:[gene symbol:CG7380 FBgn0031977 gene_boundaries:(2L: [hmr_yeast5_DM3-1_pombe.fasta]
  • (Q9VLU0) Hypothetical BAF-like protein CG7380 [DrosMelano7227.FASTAC.txt]
  • (AE003619) CG7380 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG7380-PA [Drosophila melanogaster]gi|20129349|ref|NP_609176.1| CG7380-PA [Drosophila melanogaster]gi|42415437|gb|AAS15688.1| GH06291p [Drosophila melanogaster]gi|22095479|sp|Q9VLU0|BAFL_DROME Hypothetical BAF-like protein CG7380 [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592; MD5=15c09e79 [fly-100309-contam.fasta]
  • CG7380-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • BAF-like protein CG7380 [nr-271106-contam.fasta]
  • GH06291p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • Barrier-to-autointegration factor OS=Drosophila melanogaster GN=baf PE=1 SV=1 [UniProt_drosophila_07-01-2011_reversed.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592,FlyMine:FBpp0079157,modMine:FBpp0079157; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0305308; name=baf-PB; parent=FBgn0031977,FBtr0333095; dbxref=FlyBase:FBpp0305308,FlyBase_Annotation_IDs:CG7380-PB; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592,FlyMine:FBpp0079157,modMine:FBpp0079157; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0305308; name=baf-PB; parent=FBgn0031977,FBtr0333095; dbxref=REFSEQ:NP_001260220,GB_protein:AGB92756,FlyBase:FBpp0305308,FlyBase_Annotation_IDs:CG7380-PB; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592,FlyMine:FBpp0079157,modMine:FBpp0079157; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0305308; name=baf-PB; parent=FBgn0031977,FBtr0333095; dbxref=REFSEQ:NP_001260220,GB_protein:AGB92756,FlyBase:FBpp0305308,FlyBase_Annotation_IDs:CG7380-PB; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of Q9VLU0, Barrier to autointegration factor, isoform B OS=Drosophila melanogaster GN=baf PE=4 SV=1 [DROME.fasta.20160308]
  • FBpp0079157 type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592,FlyMine:FBpp0079157,modMine:FBpp0079157; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0305308 type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0305308; name=baf-PB; parent=FBgn0031977,FBtr0333095; dbxref=REFSEQ:NP_001260220,GB_protein:AGB92756,FlyBase:FBpp0305308,FlyBase_Annotation_IDs:CG7380-PB; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0079157; name=baf-PA; parent=FBgn0031977,FBtr0079535; dbxref=FlyBase:FBpp0079157,FlyBase_Annotation_IDs:CG7380-PA,GB_protein:AAF52592.1,REFSEQ:NP_609176,GB_protein:AAF52592,UniProt/Swiss-Prot:Q9VLU0,FlyMine:FBpp0079157,modMine:FBpp0079157; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:join(8029608..8029733,8029816..8029962); ID=FBpp0305308; name=baf-PB; parent=FBgn0031977,FBtr0333095; dbxref=REFSEQ:NP_001260220,GB_protein:AGB92756,FlyBase:FBpp0305308,FlyBase_Annotation_IDs:CG7380-PB,UniProt/Swiss-Prot:Q9VLU0; MD5=15c09e792367a1c7bc3561798c183f28; length=90; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 90 amino acids

    Gene Ontology:
    Cellular Component: nucleus [NAS]
    Biological Process: karyosome formation [IMP]
    Molecular Function: DNA binding [IEA][NAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGTSQKHRN FVAEPMGNKS VTELAGIGET LGGRLKDAGF DMAYTVLGQY LVLKKDEELF  60
   61 KDWMKEVCHA SSKQASDCYN CLNDWCEEFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..90] PSI-BLAST 41.39794 Barrier-to-autointegration factor, BAF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  2.04668306874326 bayes_pls_golite062009
  • DNA binding
    		•  1.71225698697944 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.68436311270395 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle