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Protein Overview: FBpp0307163, p16...

General Information:
Name(s) found: FBpp0307163 [FlyBase]
p16-ARC-PA / FBpp0077378 [FlyBase]
Description(s) found:
Found 28 descriptions.
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  • type=protein; loc=2L:join(2580369..2580581,2580644..2580886); ID=FBpp0307163; name=Arpc5-PB; parent=FBgn0031437,FBtr0335170; dbxref=REFSEQ:NP_001259945,GB_protein:AGB92482,FlyBase:FBpp0307163,FlyBase_Annotation_IDs:CG9881-PB; MD5=88da80488ded78214c9538518c16fa00; length=151; release=r5.56; species=Dmel; [FlyBase]
  • The gene p16-ARC is referred to in FlyBase by the symbol Dmel\p16-ARC (CG9881, FBgn0031437). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:2580291..2581114. It has the cytological map location 23A1. Based on sequence similarity, it is predicted to have molecular function</span>: actin binding. There is experimental evidence that it is involved in the biological process</span>: phagocytosis, engulfment. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 151 amino acids

    Gene Ontology:
    Cellular Component: cytoskeleton [IEA]
    lamellipodium [IDA]
    Biological Process: regulation of actin filament polymerization [IEA]
    phagocytosis, engulfment [IMP]
    Molecular Function: actin binding [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKNTSSNAF RKIDVDQYNE DNFREDDGVE SAAAGPDESE ITTLLTQGKS VEALLSALQN  60
   61 APLRCKNQNV KDHALNITLR VLLSIKSTQM DQAIDTLDQN DLIDVLMKYI YRGFEIPSEG 120
  121 SSGHLLQWHE KAFAKGGVGC IVRVLSDTNR A

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..151] PSI-BLAST 62.09691 Arp2/3 complex 16 kDa subunit ARPC5

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • actin binding
    		•  4.05206194993572 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.8232927372914 bayes_pls_golite062009
  • binding
    		•  1.90005462139283 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  1.81816151576197 bayes_pls_golite062009
  • structural molecule activity
    		•  0.741023826941194 bayes_pls_golite062009
  • protein binding
    		•  0.727270535642847 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle