YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: Clp-PA

General Information:
Name(s) found: Clp-PA / FBpp0077676 [FlyBase]
Description(s) found:
Found 23 descriptions.
SHOW ALL
  • The gene Clipper is referred to in FlyBase by the symbol Dmel\Clp (CG3642, FBgn0015621). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:819964..821209. It has the cytological map location 21E2. There is experimental evidence that it has the molecular function</span>: endoribonuclease activity. Based on sequence similarity, it is predicted to be involved in the biological process</span>: mRNA polyadenylation; mRNA cleavage. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. [FlyBase]
    • Organism: Drosophila melanogaster
    Length: 296 amino acids

    Gene Ontology:
    Cellular Component: mRNA cleavage and polyadenylation specificity factor complex [ISS]
    Biological Process: mRNA polyadenylation [ISS]
    mRNA cleavage [ISS]
    Molecular Function: nucleic acid binding [IEA]
    zinc ion binding [IEA]
    endoribonuclease activity [IDA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILLANVSG LQFKAERDLI EQVGAIPLPF YGMDKSIAAV CNFITRNGQE CDKGSACPFR  60
   61 HIRGDRTIVC KHWLRGLCKK GDQCEFLHEY DMTKMPECYF YSRFNACHNK ECPFLHIDPQ 120
  121 SKVKDCPWYK RGFCRHGPHC RHQHLRRVLC MDYLAGFCPE GPSCKHMHPH FELPPLAELG 180
  181 KDQLHKKLPT CHYCGELGHK ANSCKQYVGS LEHRNNINAM DHSGGHSGGY SGHSGHIEGA 240
  241 DDMQSNHHSQ PHGPGFVKVP TPLEEITCYK CGNKGHYANK CPKGHLAFLS NQHSHK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..146] PSI-BLAST 15.522879 No description for 2d9nA was found.
    2 View Details [147..195] FFAS03 1.54 Solution Structure of the Zinc-finger domain in KIAA1064 protein
    3 View Details [196..296] FFAS03 1.38 HIV nucleocapsid


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle