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Protein Overview: RpLP1-PA, FBpp03...

General Information:
Name(s) found: FBpp0304265 [FlyBase]
RpLP1-PA / FBpp0077716 [FlyBase]
Description(s) found:
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  • gi|7296207|gb|AAF51499.1| ribosomal protein LP1 [Drosophila melanogaster] [NCBI NR]
  • gi|386060|gb|AAB26902.1| acidic ribosomal protein rpA2 [Drosophila melanogaster] [NCBI NR]
  • gi|17861586|gb|AAL39270.1| GH13422p [Drosophila melanogaster] [NCBI NR]
  • gi|17136320|ref|NP_476630.1| ribosomal protein LP1 [Drosophila melanogaster] [NCBI NR]
  • gi|1350780|sp|P08570.2|RLA1_DROME RecName: Full=60S acidic ribosomal protein P1; AltName: Full=RP21C; AltName: Full=Acidic ribosomal protein RPA2 [NCBI NR]
  • 60S acidic ribosomal protein P1 OS=Drosophila melanogaster GN=RpLP1 PE=1 SV=2 [Swiss-Prot]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0304265; name=RpLP1-PB; parent=FBgn0002593,FBtr0331932; dbxref=FlyBase:FBpp0304265,FlyBase_Annotation_IDs:CG4087-PB,REFSEQ:NP_001259822,GB_protein:AGB92359; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r5.56; species=Dmel; [FlyBase]
  • The gene Ribosomal protein LP1 is referred to in FlyBase by the symbol Dmel\RpLP1 (CG4087, FBgn0002593). It is a protein_coding_gene from Drosophila melanogaster. Its sequence location is 2L:419931..420706. It has the cytological map location 21C2. Based on sequence similarity, it is predicted to have molecular function</span>: structural constituent of ribosome. Based on sequence similarity, it is predicted to be involved in the biological process</span>: translation. 3 alleles are reported. The phenotype of these alleles is annotated with: chaeta. It has one annotated transcript and one annotated polypeptide. [FlyBase]
  • >CG4087-PA translation from_gene[CG4087 RpP2 FBgn0002593] seq_release:3 mol_weight=11513 cds_boundaries:(2L:421,740..422,220[+]) aa_length:112 transcript_info:[CG4087-RA seq_release:3] gene_info:[gene symbol:RpP2 FBgn0002593 gene_boundaries:(2L:421,596 [hmr_yeast5_DM3-1_pombe.fasta]
  • (P08570) 60S acidic ribosomal protein P1 (RP21C) (Acidic ribosomal protein RPA2) [DrosMelano7227.FASTAC.txt]
  • (AE003589) RpP2 gene product [Drosophila melanogaster] [yeastflysequest.fasta]
  • CG4087-PA [Drosophila melanogaster]gi|17861586|gb|AAL39270.1| GH13422p [Drosophila melanogaster]gi|17136320|ref|NP_476630.1| CG4087-PA [Drosophila melanogaster]gi|386060|gb|AAB26902.1| acidic ribosomal protein rpA2 [Drosophila melanogaster]gi|1350780| [nrdb_11152004_Chlamydomonas]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499; MD5=14996ea00a [fly-100309-contam.fasta]
  • acidic ribosomal protein rpA2 [Drosophila melanogaster] [nr-271106-contam.fasta]
  • Ribosomal protein LP1 CG4087-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • CG4087-PA [Drosophila melanogaster] [nr-271106-contam.fasta]
  • GH13422p [Drosophila melanogaster] [nr-271106-contam.fasta]
  • 60S acidic ribosomal protein P1 (RP21C) (Acidic ribosomal protein RPA2) [nr-271106-contam.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r5.16; species=Dmel; [fly-contam-His-TEV-Tub4complex.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r5.21; species=Dmel; [Other_drosophila_na_09-09-2009_reversed.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499,FlyMine:FBpp0077716,modMine:FBpp0077716; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0304265; name=RpLP1-PB; parent=FBgn0002593,FBtr0331932; dbxref=FlyBase:FBpp0304265,FlyBase_Annotation_IDs:CG4087-PB; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r5.46; species=Dmel; [fly-062812-sfps-sandra-contam.fasta]
  • ribosomal protein LP1, isoform A [Drosophila melanogaster] [RJAZ10-comet.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499,FlyMine:FBpp0077716,modMine:FBpp0077716; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0304265; name=RpLP1-PB; parent=FBgn0002593,FBtr0331932; dbxref=FlyBase:FBpp0304265,FlyBase_Annotation_IDs:CG4087-PB,REFSEQ:NP_001259822,GB_protein:AGB92359; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.02; species=Dmel; [fly-2014-05-contam.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0304265; name=RpLP1-PB; parent=FBgn0002593,FBtr0331932; dbxref=FlyBase:FBpp0304265,FlyBase_Annotation_IDs:CG4087-PB,REFSEQ:NP_001259822,GB_protein:AGB92359; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499,FlyMine:FBpp0077716,modMine:FBpp0077716; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.07; species=Dmel; [fly-08202015-contam.fasta]
  • Isoform of P08570, Ribosomal protein LP1, isoform B OS=Drosophila melanogaster GN=RpLP1 PE=3 SV=1 [DROME.fasta.20160308]
  • FBpp0077716 type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499,FlyMine:FBpp0077716,modMine:FBpp0077716; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • FBpp0304265 type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0304265; name=RpLP1-PB; parent=FBgn0002593,FBtr0331932; dbxref=FlyBase:FBpp0304265,FlyBase_Annotation_IDs:CG4087-PB,REFSEQ:NP_001259822,GB_protein:AGB92359; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.09; species=Dmel; [dmel-all-translation-r6.09.fasta]
  • [fly-122215-dmel-6-09-contam.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0077716; name=RpLP1-PA; parent=FBgn0002593,FBtr0078056; dbxref=FlyBase:FBpp0077716,FlyBase_Annotation_IDs:CG4087-PA,GB_protein:AAF51499.1,REFSEQ:NP_476630,GB_protein:AAF51499,UniProt/Swiss-Prot:P08570,FlyMine:FBpp0077716,modMine:FBpp0077716; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
  • type=protein; loc=2L:join(420075..420146,420292..420558); ID=FBpp0304265; name=RpLP1-PB; parent=FBgn0002593,FBtr0331932; dbxref=FlyBase:FBpp0304265,FlyBase_Annotation_IDs:CG4087-PB,REFSEQ:NP_001259822,GB_protein:AGB92359,UniProt/Swiss-Prot:P08570; MD5=14996ea00a002e01173b79d94ab23b2f; length=112; release=r6.14; species=Dmel; [fly-dmel-jan2017-sandracontam.fasta]
    • Organism: Drosophila melanogaster
    Length: 112 amino acids

    Gene Ontology:
    Cellular Component: lipid particle [IDA]
    cytosolic large ribosomal subunit [ISS][NAS]
    Biological Process: translational elongation [IEA][NAS]
    translation [ISS]
    Molecular Function: structural constituent of ribosome [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKAELACV YASLILVDDD VAVTGEKINT ILKAANVEVE PYWPGLFAKA LEGINVKDLI  60
   61 TNIGSGVGAA PAGGAAPAAA AAAPAAESKK EEKKKEEESD QSDDDMGFGL FD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..112] Pfam 36.886057 No description for PF00428.10 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.74

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle