Protein Overview: gi|109472280, gi...

General Information:
Name(s) found:	gi\|205360903 [NCBI NR] gi\|197246583 [NCBI NR] gi\|149036610 [NCBI NR] gi\|109500820 [NCBI NR] gi\|109499928 [NCBI NR] gi\|109473781 [NCBI NR] gi\|109472280 [NCBI NR] gi\|109461740 [NCBI NR]
Description(s) found: SHOW ONLY BEST	gi\|205360903\|ref\|NP_001128557.1\| small nuclear ribonucleoprotein polypeptide G [Rattus norvegicus] [NCBI NR] gi\|197246583\|gb\|AAI68750.1\| Snrpg protein [Rattus norvegicus] [NCBI NR] gi\|149036610\|gb\|EDL91228.1\| rCG56468, isoform CRA_b [Rattus norvegicus] [NCBI NR] gi\|109500820\|ref\|XP_001063720.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G [Rattus norvegicus] [NCBI NR] gi\|109499928\|ref\|XP_001060066.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G [Rattus norvegicus] [NCBI NR] gi\|109473781\|ref\|XP_001069586.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G isoform 3 [Rattus norvegicus] [NCBI NR] gi\|109472280\|ref\|XP_001058230.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G isoform 3 [Rattus norvegicus] [NCBI NR] gi\|109461740\|ref\|XP_001079708.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G [Rattus norvegicus] [NCBI NR] Ensembl_locations(Chr-bp):4-124197969;14-74357848 [hmr_yeast5_DM3-1_pombe.fasta] Tax_Id=10116 8 kDa protein [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta] rCG56468, isoform CRA_b [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] PREDICTED: similar to small nuclear ribonucleoprotein polypeptide G isoform 3 [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta] Tax_Id=10116 8KDA PROTEIN [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta] small nuclear ribonucleoprotein polypeptide G [Rattus norvegicus] [NCBI-RefSeq_human-rat_na_04-07-2009_con_reversed.fasta] Tax_Id=10116 Gene_Symbol=Snrpg;Snrpg-ps1;LOC687679 small nuclear ribonucleoprotein polypeptide G [rat-ipi-250309-contam.fasta] RCG56468, isoform CRA_b OS=Rattus norvegicus GN=Snrpg [011711_HMR.fasta] RCG56468, isoform CRA_b OS=Rattus norvegicus GN=Snrpg PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta] Protein LOC100360635 OS=Rattus norvegicus GN=Snrpg PE=4 SV=1 [Aridor_1205.fasta] Protein LOC100360635 OS=Rattus norvegicus GN=LOC100911683 PE=2 SV=1 [20141208_RAT.fasta] Protein LOC687679 OS=Rattus norvegicus GN=Snrpg PE=1 SV=1 [RAT.fasta.20160308]
Organism:	Rattus norvegicus
Length:	76 amino acids
Gene Ontology:
Cellular Component:	cytosol [UNKNOWN] U7 snRNP [UNKNOWN] nucleoplasm [UNKNOWN]
Biological Process:	RNA splicing [UNKNOWN] spliceosomal snRNP assembly [UNKNOWN]
Molecular Function:	protein binding [UNKNOWN]

Sequence:
Sequence: [PDR BLAST] [ProtParam]	1 11 21 31 41 51 \| \| \| \| \| \| 1 MSKAHPPELK KFMDKKLSLK LNGGRHVQGI LRGFDPFMNL VIDECVEMAT SGQQNNIGMV 60 61 VIRGNSIIML EALERV

Protein Complex Data

No complex found for this protein.

Mass Spectrometry Data

No mass spectrometry results found for this protein.

Yeast Two-Hybrid Data

The following interactions contain this protein:

SHOWING SINGLE HITS. [ Hide Single Hits ]

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No yeast two-hybrid interactions found for this protein.

Microscopy / Localization Data

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No microscopy data found in the PDR for this protein.

Protein Structure Data

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Domains predicted:

#		Region(s)	Method	Confidence	Match Description
1	View Details	[1..76]	PSI-BLAST	17.522879	B core SNRNP protein

Functions predicted (by domain):

#

Gene Ontology predictions

1

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.44117021254507	bayes_pls_golite062009
protein binding	0.318488892917007	bayes_pls_golite062009

Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

Philius Transmembrane Prediction:

Protein predicted to be:	GLOBULAR (No transmembrane regions or signal peptide)
Confidence of classification:	0.99

Source: Reynolds et al. (2008)

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle