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Protein Overview: bre-1

General Information:
Name(s) found: bre-1 / CE40448 [WormBase]
Description(s) found:
Found 11 descriptions.
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  • WBGene00000266 locus:bre-1 GDP-mannose 4,6 dehydratase 1 status:Confirmed UniProt:Q18801 protein_id:CAL49436.1 [WormBase]
    • Organism: Caenorhabditis elegans
    Length: 394 amino acids

    Gene Ontology:
    Cellular Component: intracellular [IEALink to PubMed article]
    Biological Process: GDP-L-fucose biosynthetic process [IDALink to PubMed article]
    metabolic process [IEALink to PubMed article]
    GDP-mannose metabolic process [IDALink to PubMed article][IEALink to PubMed article]
    nucleotide-sugar metabolic process [IEALink to PubMed article]
    galactose metabolic process [IEALink to PubMed article]
    cellular metabolic process [IEALink to PubMed article]
    Molecular Function: coenzyme binding [IEALink to PubMed article]
    catalytic activity [IEALink to PubMed article]
    oxidoreductase activity [IEALink to PubMed article]
    UDP-glucose 4-epimerase activity [IEALink to PubMed article]
    dTDP-glucose 4,6-dehydratase activity [IEALink to PubMed article]
    GDP-mannose 4,6-dehydratase activity [IDALink to PubMed article][IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSHDSKIFC QTCSNGNNQG LEACIGMSHE VSTTPAAELA AFRARKVALI TGISGQDGSY  60
   61 LAELLLSKGY KVHGIIRRSS SFNTARIEHL YSNPITHHGD SSFSLHYGDM TDSSCLIKLI 120
  121 STIEPTEVYH LAAQSHVKVS FDLPEYTAEV DAVGTLRLLD AIHACRLTEK VRFYQASTSE 180
  181 LYGKVQEIPQ SEKTPFYPRS PYAVAKMYGY WIVVNYREAY NMFACNGILF NHESPRRGET 240
  241 FVTRKITRSV AKISLGQQES IELGNLSALR DWGHAREYVE AMWRILQHDS PDDFVIATGK 300
  301 QFSVREFCNL AFAEIGEVLQ WEGEGVEEVG KNKDGVIRVK VSPKYYRPTE VETLLGNAEK 360
  361 AKKTLGWEAK VTVPELVKEM VASDIILMKS NPMA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..394] PSI-BLAST 77.69897 Crystal structure of human GDP-D-mannose 4,6-dehydratase

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • UDP-glucose 4-epimerase activity
    		•  2.13934644118967 bayes_pls_golite062009
  • catalytic activity
    		•  1.79741889688267 bayes_pls_golite062009
  • oxidoreductase activity, acting on CH-OH group of donors
    		•  1.03956654822048 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
    		•  0.82673050487418 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle