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Protein Overview: gi|125545742

General Information:
Name(s) found: gi|125545742 [NCBI NR]
Description(s) found:
  • gi|125545742|gb|EAY91881.1| hypothetical protein OsI_13529 [Oryza sativa Indica Group] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 226 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLSLSLHH PCNSRTGFLG KRQGICLHVI PAGRVGFVRK TIECKESRIG KKPIEVPSNV  60
   61 TLTLEEQFIK AKGPLGELSL NYPGEVKVVK EESGKLRVSK TVETKRANQM HGLFRTLTDN 120
  121 IIVGVSKGFD KKLQLVGVGY RAAVEGKDLV MNLGFSHPVR MAVPEGLKVK VEENTRIIVS 180
  181 GYDKSEIGQF AASIKKWRPP EPYKGKGIRY ADEVVRRKEG KAGKKK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..226] PSI-BLAST 63.69897 50S subunit

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  9.94614353072897 bayes_pls_golite062009
  • structural molecule activity
    		•  9.3691467221987 bayes_pls_golite062009
  • binding
    		•  1.60103058866857 bayes_pls_golite062009
  • protein binding
    		•  0.574304313407193 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.94

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle