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Protein Overview: gi|205361137, gi...

General Information:
Name(s) found: gi|62656744 [NCBI NR]
gi|205361137 [NCBI NR]
gi|197246386 [NCBI NR]
gi|149053789 [NCBI NR]
gi|109491600 [NCBI NR]
Description(s) found:
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  • gi|62656744|ref|XP_213415.3| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensitivity-inducing factor small subunit 1) (DSIF small subunit 1) [Rattus norvegicus] [NCBI NR]
  • gi|205361137|ref|NP_001099298.2| suppressor of Ty 4 homolog 1 [Rattus norvegicus] [NCBI NR]
  • gi|197246386|gb|AAI68730.1| Supt4h1 protein [Rattus norvegicus] [NCBI NR]
  • gi|149053789|gb|EDM05606.1| rCG33054, isoform CRA_c [Rattus norvegicus] [NCBI NR]
  • gi|109491600|ref|XP_001081172.1| PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensitivity-inducing factor small subunit 1) (DSIF small subunit 1) [Rattus norvegicus] [NCBI NR]
  • Ensembl_locations(Chr-bp):10-74428954 [hmr_yeast5_DM3-1_pombe.fasta]
  • Tax_Id=10116 PREDICTED: similar to Transcription initiation protein SPT4 homolog 1 [EBI-IPI_rat_3.17_05-10-2006_con_reversed.fasta]
  • rCG33054, isoform CRA_c [Rattus norvegicus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • suppressor of Ty 4 homolog 1 [Rattus norvegicus] [NCBI-RefSeq_human-rat_na_04-07-2009_con_reversed.fasta]
  • PREDICTED: similar to Transcription elongation factor SPT4 1 (DRB sensitivity-inducing factor small subunit 1) (DSIF small subunit 1) [Rattus norvegicus] [nr-271106-contam.fasta]
  • Tax_Id=10116 Gene_Symbol=Supt4h1 Putative uncharacterized protein [rat-ipi-250309-contam.fasta]
  • RCG33054, isoform CRA_c OS=Rattus norvegicus GN=Supt4h1 [011711_HMR.fasta]
  • RCG33054, isoform CRA_c OS=Rattus norvegicus GN=Supt4h1 PE=4 SV=1 [UNIPROT_RAT_07-21-2011_reversed.fasta]
  • Protein Supt4h1 OS=Rattus norvegicus GN=Supt4h1 PE=4 SV=1 [Aridor_1205.fasta]
  • Transcription elongation factor SPT4 OS=Rattus norvegicus GN=Supt4h1 PE=2 SV=1 [20141208_RAT.fasta]
  • Transcription elongation factor SPT4 OS=Rattus norvegicus GN=Supt4h1 PE=1 SV=1 [RAT.fasta.20160308]
    • Organism: Rattus norvegicus
    Length: 117 amino acids

    Gene Ontology:
    Cellular Component: nucleus [UNKNOWN][IEA]
    nucleoplasm [UNKNOWN]
    Biological Process: negative regulation of transcription from RNA polymerase II promoter [UNKNOWN][IEA]
    positive regulation of transcription [IEA]
    positive regulation of transcription from RNA polymerase II promoter [UNKNOWN][IEA]
    RNA elongation from RNA polymerase II promoter [UNKNOWN][IEA]
    Molecular Function: zinc ion binding [IEA]
    protein binding [UNKNOWN][IEA]
    protein heterodimerization activity [UNKNOWN][IEA]
    negative transcription elongation factor activity [UNKNOWN][IEA]
    positive transcription elongation factor activity [UNKNOWN][IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALETVPKDL RHLRACLLCS LVKTIDQFEY DGCDNCDAYL QMKGNREMVY DCTSSSFDGI  60
   61 IAMMSPEDSW VSKWQRVSNF KPGVYAVSVT GRLPQGIVRE LKSRGVAYKS RDTAIKT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] PSI-BLAST 40.0 No description for 2exuA was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle