YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|123999198, gi...

General Information:
Name(s) found: gi|123999198 [NCBI NR]
gi|123988683 [NCBI NR]
Description(s) found:
Found 2 descriptions.
SHOW ALL
  • gi|123999198|gb|ABM87179.1| nuclear RNA export factor 1 [synthetic construct] [NCBI NR]
  • gi|123988683|gb|ABM83857.1| nuclear RNA export factor 1 [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 619 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEGKSYSE HDDERVNFPQ RKKKGRGPFR WKYGEGNRRS GRGGSGIRSS RLEEDDGDVA  60
   61 MSDAQDGPRV RYNPYTTRPN RRGDTWHDRD RIHVTVRRDR APPERGGAGT SQDGTSKNWF 120
  121 KITIPYGRKY DKAWLLSMIQ SKCSVPFTPI EFHYENTRAQ FFVEDASTAS ALKAVNYKIL 180
  181 DRENRRISII INSSAPPHTI LNELKPEQVE QLKLIMSKRY DGSQQALDLK GLRSDPDLVA 240
  241 QNIDVVLNRR SCMAATLRII EENIPELLSL NLSNNRLYRL DDMSSIVQKA PNLKILNLSG 300
  301 NELKSERELD KIKGLKLEEL WLDGNSLCDT FRDQSTYISA IRERFPKLLR LDGHELPPPI 360
  361 AFDVEAPTTL PPCKGSYFGT ENLKSLVLHF LQQYYAIYDS GDRQGLLDAY HDGACCSLSI 420
  421 PFIPQNPARS SLAEYFKDSR NVKKLKDPTL RFRLLKHTRL NVVAFLNELP KTQHDVNSFV 480
  481 VDISAQTSTL LCFSVNGVFK EVDGKSRDSL RAFTRTFIAV PASNSGLCIV NDELFVRNAS 540
  541 SEEIQRAFAM PAPTPSSSPV PTLSPEQQEM LQAFSTQSGM NLEWSQKCLQ DNNWDYTRSA 600
  601 QAFTHLKAKG EIPEVAFMK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] deduced N/A No confident structure predictions are available.
    2 View Details [94..191] PSI-BLAST 41.30103 mRNA export factor tap
    3 View Details [192..487] PSI-BLAST 21.69897 No description for 2id5A was found.
    4 View Details [488..540] PSI-BLAST 15.69897 Crystal structure of the C. albicans Mtr2-Mex67 M domain complex
    5 View Details [541..619] PSI-BLAST 76.045757 NTF2-like domain of Tip associating protein, TAP

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4
    Term Confidence Notes
  • nucleocytoplasmic transporter activity
    		•  4.11811310168752 bayes_pls_golite062009
  • protein transporter activity
    		•  2.82714862961769 bayes_pls_golite062009
  • binding
    		•  2.08734227778958 bayes_pls_golite062009
  • RNA binding
    		•  1.98983420561953 bayes_pls_golite062009
  • transporter activity
    		•  1.80701285041353 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  1.79601989348889 bayes_pls_golite062009
  • mRNA binding
    		•  1.39091688795726 bayes_pls_golite062009
  • protein binding
    		•  1.36536670483288 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.33804818542017 bayes_pls_golite062009
  • structural constituent of nuclear pore
    		•  1.30758304562723 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.22102896992563 bayes_pls_golite062009
  • Ran GTPase binding
    		•  1.18290069522408 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.890150150408175 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven protein transmembrane transporter activity
    		•  0.45916069455408 bayes_pls_golite062009
  • macromolecule transmembrane transporter activity
    		•  0.45916069455408 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.446562877324676 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.439519001457896 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.430285640125175 bayes_pls_golite062009
    5
    Term Confidence Notes
  • nucleocytoplasmic transporter activity
    		•  4.11811310168752 bayes_pls_golite062009
  • protein transporter activity
    		•  2.82714862961769 bayes_pls_golite062009
  • binding
    		•  2.08734227778958 bayes_pls_golite062009
  • RNA binding
    		•  1.98983420561953 bayes_pls_golite062009
  • transporter activity
    		•  1.80701285041353 bayes_pls_golite062009
  • protein transmembrane transporter activity
    		•  1.79601989348889 bayes_pls_golite062009
  • mRNA binding
    		•  1.39091688795726 bayes_pls_golite062009
  • protein binding
    		•  1.36536670483288 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.33804818542017 bayes_pls_golite062009
  • structural constituent of nuclear pore
    		•  1.30758304562723 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.22102896992563 bayes_pls_golite062009
  • Ran GTPase binding
    		•  1.18290069522408 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.890150150408175 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven protein transmembrane transporter activity
    		•  0.45916069455408 bayes_pls_golite062009
  • macromolecule transmembrane transporter activity
    		•  0.45916069455408 bayes_pls_golite062009
  • primary active transmembrane transporter activity
    		•  0.446562877324676 bayes_pls_golite062009
  • P-P-bond-hydrolysis-driven transmembrane transporter activity
    		•  0.439519001457896 bayes_pls_golite062009
  • active transmembrane transporter activity
    		•  0.430285640125175 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle