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Protein Overview: gi|114629422, gi...

General Information:
Name(s) found: gi|114629424 [NCBI NR]
gi|114629422 [NCBI NR]
Description(s) found:
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  • gi|114629424|ref|XP_001142558.1| PREDICTED: PRP18 pre-mRNA processing factor 18 homolog isoform 6 [Pan troglodytes] [NCBI NR]
  • gi|114629422|ref|XP_001142416.1| PREDICTED: PRP18 pre-mRNA processing factor 18 homolog isoform 4 [Pan troglodytes] [NCBI NR]
  • [chimp_Ens_120109_contam.fas]
  • PREDICTED: PRP18 pre-mRNA processing factor 18 homolog isoform 6 [Pan troglodytes] [nr-271106-contam.fasta]
  • PREDICTED: PRP18 pre-mRNA processing factor 18 homolog isoform 4 [Pan troglodytes] [nr-271106-contam.fasta]
    • Organism: Pan troglodytes
    Length: 342 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDILKSEILR KRQLVEDRNL LVENKKYFKR SELAKKEEEA YFERCGYKIQ PKEEDQKPLT  60
   61 SSNPVLELEL AEEKLPMTLS RQEVIRRLRE RGEPIRLFGE TDYDAFQRLR KIEILTPEVN 120
  121 KGLRNDLKAA LDKIDQQYLN EIVGGQEPGE EDTQNDLKVH EENTTIEELE ALGESLGKGD 180
  181 DHKDMDIITK FLKFLLGVWA KELNAREDYV KRSVQGKLNS ATQKQTESYL RPLFRKLRKR 240
  241 NLPADIKESI TDIIKFMLQR EYVKANDAYL QMAIGNAPWP IGVTMVGIHA RTGREKIFSK 300
  301 HVAHVLNDET QRKYIQGLKR LMTICQKHFP TDPSKCVEYN AL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..153] PSI-BLAST 12.30103 No description for 2dk4A was found.
    2 View Details [154..342] PSI-BLAST 49.0 Functional domain of the splicing factor Prp18

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
    		• 8.4933513491836 bayes_pls_golite062009
  • second spliceosomal transesterification activity
    		•  5.51692977589724 bayes_pls_golite062009
  • catalytic activity
    		•  0.60409960326459 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.95

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle