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Protein Overview: gi|31980617, gi|...

General Information:
Name(s) found: gi|51330862 [NCBI NR]
gi|31980617 [NCBI NR]
gi|148670694 [NCBI NR]
gi|14602591 [NCBI NR]
Description(s) found:
Found 28 descriptions.
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  • gi|51330862|gb|AAH80204.1| Vesicle transport through interaction with t-SNAREs 1B homolog [Mus musculus] [NCBI NR]
  • gi|31980617|ref|NP_058080.2| vesicle transport through interaction with t-SNAREs 1B homolog [Mus musculus] [NCBI NR]
  • gi|148670694|gb|EDL02641.1| vesicle transport through interaction with t-SNAREs 1B homolog, isoform CRA_c [Mus musculus] [NCBI NR]
  • gi|14602591|gb|AAH09810.1| Vesicle transport through interaction with t-SNAREs 1B homolog [Mus musculus] [NCBI NR]
    • Organism: Mus musculus
    Length: 232 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASAASSEH FEKLHEIFRG LLEDLQGVPE RLLGTAGTEE KKKLVRDFDE KQQEANETLA  60
   61 EMEEELRYAP LTFRNPMMSK LRNYRKDLAK LHREVRSTPL TAAPGGRGDL KYGTYTLENE 120
  121 HLNRLQSQRA LLLQGTESLN RATQSIERSH RIATETDQIG TEIIEELGEQ RDQLERTKSR 180
  181 LVNTNENLSK SRKILRSMSR KVITNKLLLS VIILLELAIL VGLVYYKFFR HH

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..116] FFAS03 3.56 Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus]
    2 View Details [117..232] PSI-BLAST 5.0 Vesicle ransport v-SNARE protein VTI1b

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphatidic acid binding
    		•  4.43639331290696 bayes_pls_golite062009
  • SNAP receptor activity
    		•  2.87584659156593 bayes_pls_golite062009
  • calcium channel inhibitor activity
    		•  2.6070306401994 bayes_pls_golite062009
  • binding
    		•  2.10865031355861 bayes_pls_golite062009
  • arachidonic acid binding
    		•  2.07456472080416 bayes_pls_golite062009
  • protein binding
    		•  1.71065434412329 bayes_pls_golite062009
  • transporter activity
    		•  1.70608335538771 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  1.43050612049396 bayes_pls_golite062009
  • myosin head/neck binding
    		•  1.33894171285049 bayes_pls_golite062009
  • transmembrane transporter activity
    		•  1.13402377922348 bayes_pls_golite062009
  • protein transporter activity
    		•  0.874305466215024 bayes_pls_golite062009
  • substrate-specific transmembrane transporter activity
    		•  0.641704633739097 bayes_pls_golite062009
  • SNARE binding
    		•  0.387098576112631 bayes_pls_golite062009
  • ion transmembrane transporter activity
    		•  0.36574534937133 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    [View Details]
    Source: Reynolds et al. 2008. Manuscript submitted Philius confidence legend
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle