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Protein Overview: gi|71681449, gi|...

General Information:
Name(s) found: gi|94389552 [NCBI NR]
gi|83028004 [NCBI NR]
gi|81230474 [NCBI NR]
gi|71681449 [NCBI NR]
gi|20865504 [NCBI NR]
Description(s) found:
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  • gi|94389552|ref|XP_979295.1| PREDICTED: similar to ribosomal protein S12 [Mus musculus] [NCBI NR]
  • gi|83028004|ref|XP_918600.1| PREDICTED: similar to Predicted gene, EG237433 [Mus musculus] [NCBI NR]
  • gi|81230474|ref|NP_001032243.1| ribosomal protein S12-like [Mus musculus] [NCBI NR]
  • gi|71681449|gb|AAI00582.1| Predicted gene, EG237433 [Mus musculus] [NCBI NR]
  • gi|20865504|ref|XP_137275.1| PREDICTED: hypothetical protein LOC237433 [Mus musculus] [NCBI NR]
  • Ensembl_locations(Chr-bp):10-88212933 [hmr_yeast5_DM3-1_pombe.fasta]
  • similar to ribosomal protein S12; 40S ribosomal protein S12 [HMR_022704-rand.fasta]
  • similar to ribosomal protein S12 [Mus musculus] [nrdb_11152004_Chlamydomonas]
  • Similar to riboSomal protein S12 [ipi.MOUSE.v3.06.fasta]
  • Tax_Id=10090 Hypothetical protein LOC237433 [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • PREDICTED: similar to ribosomal protein S12 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • PREDICTED: hypothetical protein LOC237433 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Tax_Id=10090 Similar to riboSomal protein S12 [EBI-IPI_mouse_3.06_05-10-2005_origrev_con.fasta]
  • PREDICTED: similar to Predicted gene, EG237433 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Predicted gene, EG237433 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 SIMILAR TO RIBOSOMAL PROTEIN S12 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=EG237433 40S ribosomal protein S12 [mouse-ipi-250309-contam.fasta]
  • ribosomal protein S12-like [Mus musculus] [NCBI-RefSeq_mouse_na_09-14-2009_con_reversed.fasta]
  • EG237433 protein [Mus musculus] [nr-271106-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=EG237433 Predicted [zeeyong.fasta]
  • Tax_Id=10090 Gene_Symbol=EG237433 40S ribosomal protein S12 ENSMUSG00000069540 IPI00133104 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • IPI:IPI00133104.1|TREMBL:Q497F4|ENSEMBL:ENSMUSP00000089878|REFSEQ:XP_137275;XP_918600 Tax_Id=10090 Gene_Symbol=EG237433 40S ribosomal protein S12 [ipi.MOUSE.fasta.20090209]
  • 40S ribosomal protein S12 OS=Mus musculus GN=Gm4925 [011711_HMR.fasta]
  • Tax_Id=10090 Gene_Symbol=Gm4925 ribosomal protein S12-like [EBI-IPI_mouse_2_08-18-2011_reversed.fasta]
  • tr|Q497F4|Q497F4_MOUSE 40S ribosomal protein S12 OS=Mus musculus GN=Gm4925 PE=2 SV=1 [uniprot.sptr.mouse.20130102]
  • 40S ribosomal protein S12 OS=Mus musculus GN=Gm4925 PE=2 SV=1 [mouse-uniprot-290313-contam.fasta]
    • Organism: Mus musculus
    Length: 132 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKEGTAAGV VMDVNTALQE VLKTALVHDG LARGIHEAAK ALGKRQAHLC VLASNCDKPM  60
   61 YIKLVETLCA EHQINLIKVD DNKKLGEWVG LCKIDRKGKP RKVIGCSCVV VKDFGQESQA 120
  121 KDVIEEYFKC RK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..132] PSI-BLAST 22.30103 Molecular basis of Box C/D RNA-protein interaction: co-crystal structure of the Archaeal sRNP intiation complex

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • structural constituent of ribosome
    		•  7.52323416912124 bayes_pls_golite062009
  • structural molecule activity
    		•  6.97581143389173 bayes_pls_golite062009
  • RNA binding
    		•  3.17103797166833 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.89156659324072 bayes_pls_golite062009
  • binding
    		•  1.31970199852267 bayes_pls_golite062009
    		• 0.61812240381857 bayes_pls_golite062009
  • catalytic activity
    		•  0.264002643439785 bayes_pls_golite062009
  • mRNA binding
    		•  0.259807967594031 bayes_pls_golite062009
  • protein binding
    		•  0.128962984939985 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.96

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle