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Protein Overview: RSMB_MOUSE

General Information:
Name(s) found: RSMB_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|74226859|dbj|BAE27074.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|6678053|ref|NP_033251.1| small nuclear ribonucleoprotein B [Mus musculus] [NCBI NR]
  • pir||I53659 Sm-B protein - mouse [NCBI NR]
  • gi|200992|gb|AAA40119.1| Sm-B protein [NCBI NR]
  • gi|148696304|gb|EDL28251.1| mCG9909 [Mus musculus] [NCBI NR]
  • gi|134038|sp|P27048.1|RSMB_MOUSE RecName: Full=Small nuclear ribonucleoprotein-associated protein B; Short=snRNP-B; Short=Sm protein B; Short=Sm-B; Short=SmB [NCBI NR]
  • gi|123858412|emb|CAM17542.1| small nuclear ribonucleoprotein B [Mus musculus] [NCBI NR]
  • Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):2-131825096 Small nuclear ribonucleoprotein associated protein B [hmr_yeast5_DM3-1_pombe.fasta]
  • small nuclear ribonucleoprotein B [HMR_022704-rand.fasta]
  • Small nuclear ribonucleoprotein associated protein B [ipi.MOUSE.v3.06.fasta]
  • small nuclear ribonucleoprotein B [Mus musculus]gi|54035580|gb|AAH84002.1| Unknown (protein for MGC:98150) [Xenopus laevis]gi|134038|sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)gi|21377 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 Small nuclear ribonucleoprotein-associated protein B [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_009225) small nuclear ribonucleoprotein B [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • small nuclear ribonucleoprotein B [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Tax_Id=10090 Small nuclear ribonucleoprotein associated protein B [EBI-IPI_mouse_3.06_05-10-2005_origrev_con.fasta]
  • Small nuclear ribonucleoprotein-associated protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • mCG9909 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Sm-B protein [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Snrpb Small nuclear ribonucleoprotein-associated protein B [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Snrpb Small nuclear ribonucleoprotein-associated protein B ENSMUSG00000027404 IPI00114052 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • small nuclear ribonucleoprotein-associated protein B [Mus musculus] [NCBI-RefSeq_mouse_na_05-17-2010_reversed.fasta]
  • IPI:IPI00114052.1|SWISS-PROT:P27048|TREMBL:A2APD4|ENSEMBL:ENSMUSP00000099488|REFSEQ:NP_033251|VEGA:OTTMUSP00000016510 Tax_Id=10090 Gene_Symbol=Snrpb Small nuclear ribonucleoprotein-associated protein B [ipi.MOUSE.fasta.20090209]
  • Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb [011711_HMR.fasta]
  • Small nuclear ribonucleoprotein-associated protein B n=12 Tax=Euteleostomi RepID=RSMB_MOUSE [UniProt_Xenopus_laevis_01-01-2011_reversed.fasta]
  • sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus musculus GN=Snrpb PE=1 SV=1 [uniprot.sptr.mouse.20130102]
  • tr|A2APD4|A2APD4_MOUSE Small nuclear ribonucleoprotein-associated protein OS=Mus musculus GN=Snrpb PE=3 SV=1 [uniprot.sptr.mouse.20130102]
  • MCG9909 OS=Mus musculus GN=Snrpb PE=4 SV=1 [UniProt_mouse_01-27-2011_reversed.fasta]
    • Organism: Mus musculus
    Length: 231 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK IKPKNSKQAE  60
   61 REEKRVLGLV LLRGENLVSM TVEGPPPKDT GIARVPLAGA AGGPGIGRAA GRGIPAGVPM 120
  121 PQAPAGLAGP VRGVGGPSQQ VMTPQGRGTV AAAAAAATAS IAGAPTQYPP GRGGPPPPMG 180
  181 RGAPPPGMMG PPPGMRPPMG PPMGLPPGRG TPMGMPPPGM RPPPPGMRGL L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..93] PSI-BLAST 25.69897 B core SNRNP protein
    2 View Details [94..231] PSI-BLAST 4.0 No description for 1y0fB was found.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.04681172391952 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.81

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle