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Protein Overview: LSM7_MOUSE

General Information:
Name(s) found: LSM7_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|83027443|ref|XP_908632.1| PREDICTED: similar to LSM7 homolog, U6 small nuclear RNA associated [Mus musculus] [NCBI NR]
  • gi|52783146|sp|Q9CQQ8.1|LSM7_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm7 [NCBI NR]
  • gi|51980691|gb|AAH81444.1| LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus musculus] [NCBI NR]
  • ref|XP_489737.1| similar to LSM7 homolog, U6 small nuclear RNA associated [Mus musculus] [NCBI NR]
  • gi|20380289|gb|AAH27511.1| LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus musculus] [NCBI NR]
  • gi|149261330|ref|XP_001477850.1| PREDICTED: hypothetical protein [Mus musculus] [NCBI NR]
  • gi|149260998|ref|XP_001478216.1| PREDICTED: hypothetical protein [Mus musculus] [NCBI NR]
  • gi|148699790|gb|EDL31737.1| mCG5973 [Mus musculus] [NCBI NR]
  • gi|148699536|gb|EDL31483.1| mCG12127, isoform CRA_d [Mus musculus] [NCBI NR]
  • gi|13384714|ref|NP_079625.1| LSM7 homolog, U6 small nuclear RNA associated [Mus musculus] [NCBI NR]
  • gi|12850664|dbj|BAB28806.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|12849195|dbj|BAB28245.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|12841027|dbj|BAB25051.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|12833484|dbj|BAB22540.1| unnamed protein product [Mus musculus] [NCBI NR]
  • U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=1 SV=1 [Swiss-Prot]
  • Ensembl_locations(Chr-bp):10-80682225;10-78205504;2-3496883 0910001B06Rik protein [hmr_yeast5_DM3-1_pombe.fasta]
  • LSM7 homolog, U6 small nuclear RNA associated [HMR_022704-rand.fasta]
  • U6 snRNA-associated Sm-like protein LSm7 [ipi.MOUSE.v3.06.fasta]
  • LSM7 homolog, U6 small nuclear RNA associated [Mus musculus]gi|51980691|gb|AAH81444.1| LSM7 homolog, U6 small nuclear RNA associated [Mus musculus]gi|51765953|ref|XP_489737.1| similar to LSM7 homolog, U6 small nuclear RNA associated [Mus musculus]gi|20 [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 U6 snRNA-associated Sm-like protein LSm7 [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_025349) RIKEN cDNA 0910001B06 [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • LSM7 homolog, U6 small nuclear RNA associated [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • PREDICTED: similar to LSM7 homolog, U6 small nuclear RNA associated [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • PREDICTED: hypothetical protein [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • mCG5973 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • mCG12127, isoform CRA_d [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM7 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Lsm7;ENSMUSG00000064317 U6 snRNA-associated Sm-like protein LSm7 [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=LOC100041500;Lsm7;LOC100046585 U6 snRNA-associated Sm-like protein LSm7 [ipi.MOUSE_jw_12may08.contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Lsm7 U6 snRNA-associated Sm-like protein LSm7 [zeeyong.fasta]
  • Tax_Id=10090 Gene_Symbol=LOC100041500;Lsm7;LOC100046585 U6 snRNA-associated Sm-like protein LSm7 ENSMUSG00000035215 IPI00132901 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • U6 snRNA-associated Sm-like protein LSm7 [Mus musculus] [NCBI-RefSeq_mouse_na_05-17-2010_reversed.fasta]
  • IPI:IPI00132901.1|SWISS-PROT:Q9CQQ8|ENSEMBL:ENSMUSP00000044993;ENSMUSP00000072521|REFSEQ:NP_079625;XP_001477850;XP_001478216 Tax_Id=10090 Gene_Symbol=ENSMUSG00000064317;Lsm7 U6 snRNA-associated Sm-like protein LSm7 [ipi.MOUSE.fasta.20090209]
  • U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 [011711_HMR.fasta]
  • Tax_Id=10090 Gene_Symbol=LOC100041500;Lsm7;LOC100046585 U6 snRNA-associated Sm-like protein LSm7 ENSMUSG00000064317 IPI00132901 [CPP_MOUSE_1_03-15-2011_reversed.fasta]
  • U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1 [UniProt_mouse_sprotvarsplic_11-08-2010_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=LOC100505147;Lsm7;Gm10146 U6 snRNA-associated Sm-like protein LSm7 [EBI-IPI_mouse_2_08-18-2011_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Gm10146;Lsm7 U6 snRNA-associated Sm-like protein LSm7 [EBI-IPI_mouse_3.71_03-24-2010_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=ENSMUSG00000064317;Lsm7 U6 snRNA-associated Sm-like protein LSm7 [EBI-IPI_mouse_3.52_11-21-2008_con_reversed.fasta]
  • sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=2 SV=1 [uniprot.sptr.mouse.20130102]
  • U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7 PE=3 SV=1 [mouse-uniprot-290313-contam.fasta]
    • Organism: Mus musculus
    Length: 103 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADKEKKKKE SILDLSKYID KTIRVKFQGG REASGILKGF DPLLNLVLDG TMEYMRDPDD  60
   61 QYKLTEDTRQ LGLVVCRGTS VVLICPQDGM EAIPNPFVQQ QDT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..103] PSI-BLAST 19.221849 B core SNRNP protein

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
    		• 9.36615441177233 bayes_pls_golite062009
  • RNA binding
    		•  5.81718051012035 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.69031444148163 bayes_pls_golite062009
  • mRNA binding
    		•  2.57166143288861 bayes_pls_golite062009
  • binding
    		•  2.44117021254507 bayes_pls_golite062009
  • protein binding
    		•  0.318488892917007 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle