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Protein Overview: VPS39_MOUSE

General Information:
Name(s) found: VPS39_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|74146053|dbj|BAE24221.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|25453319|sp|Q8R5L3.1|VPS39_MOUSE RecName: Full=Vam6/Vps39-like protein [NCBI NR]
  • gi|22164794|ref|NP_671495.1| vacuolar protein sorting 39 isoform 1 [Mus musculus] [NCBI NR]
  • gi|18857927|gb|AAL79766.1|AF281050_1 VPS39 long isoform [Mus musculus] [NCBI NR]
  • gi|123858446|emb|CAM19517.1| vacuolar protein sorting 39 (yeast) [Mus musculus] [NCBI NR]
  • Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=1 SV=1 [Swiss-Prot]
  • (Q8R5L3) Vam6/Vps39-like protein (Vps39 protein) [Swiss-Prot]
  • Ensembl_locations(Chr-bp):2-121936128 Splice isoform 1 of Q8R5L3 Vam6/Vps39-like protein [hmr_yeast5_DM3-1_pombe.fasta]
  • vacuolar protein sorting 39 isoform 1; Vam6/Vps39-like [HMR_022704-rand.fasta]
  • Splice Isoform 1 of Vam6/Vps39-like protein [ipi.MOUSE.v3.06.fasta]
  • vacuolar protein sorting 39 isoform 1 [Mus musculus]gi|18857927|gb|AAL79766.1| VPS39 long isoform [Mus musculus]gi|25453319|sp|Q8R5L3|VP39_MOUSE Vam6/Vps39-like protein (Vps39 protein) [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 Splice Isoform 1 of Vam6/Vps39-like protein [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_147153) pallidin isoform 1; pallid; syntaxin 13-interacting protein pallid; syntaxin 13 binding protein 1 [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • vacuolar protein sorting 39 isoform 1 [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Vam6/Vps39-like protein (Vps39 protein) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • vacuolar protein sorting 39 (yeast) [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • VPS39 long isoform [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 SPLICE ISOFORM 1 OF VAM6/VPS39-LIKE PROTEIN [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Vps39 Isoform 1 of Vam6/Vps39-like protein [mouse-ipi-250309-contam.fasta]
  • vam6/Vps39-like protein isoform 1 [Mus musculus] [NCBI-RefSeq_mouse_na_05-17-2010_reversed.fasta]
  • IPI:IPI00154020.1|SWISS-PROT:Q8R5L3-1|TREMBL:Q3URK7;Q3USV9;Q8BY36|ENSEMBL:ENSMUSP00000099559|REFSEQ:NP_671495|VEGA:OTTMUSP00000016272 Tax_Id=10090 Gene_Symbol=Vps39 Isoform 1 of Vam6/Vps39-like protein [ipi.MOUSE.fasta.20090209]
  • Isoform 1 of Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 [011711_HMR.fasta]
  • Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1 [UniProt_mouse_sprotvarsplic_11-08-2010_reversed.fasta]
  • sp|Q8R5L3|VPS39_MOUSE Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=2 SV=1 [uniprot.sptr.mouse.20130102]
  • tr|Q3USV9|Q3USV9_MOUSE Vacuolar protein sorting 39 (Yeast) OS=Mus musculus GN=Vps39 PE=2 SV=1 [uniprot.sptr.mouse.20130102]
  • Putative uncharacterized protein OS=Mus musculus GN=Vps39 PE=2 SV=1 [mouse-uniprot-290313-contam.fasta]
    • Organism: Mus musculus
    Length: 886 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDAFEPVPI LEKLPLQIDC LAAWEEWLLV GTKQGHLLLY RIRKDVVPAD VASPESGSCN  60
   61 RFEVTLEKSN KNFSKKIQQI HVVSQFKILV SLLENNIYVH DLLTFQQITT VSKAKGASLF 120
  121 TCDLQHTETG EEVLRMCVAV RKKLQLYFWK DREFHELQGD FSVPDVPKSM AWCENSICVG 180
  181 FKRDYYLIRV DGKGSIKELF PTGKQLEPLV APLADGKVAV GQDDLTVVLN EEGICTQKCA 240
  241 LNWTDIPVAM EHQPPYIVAV LPRYVEIRTL EPRLLVQSIE LQRPRFITSG GSNIIYVASN 300
  301 HFVWRLIPVP MATQIQQLLQ DKQFELALQL AEMKDDSDSE KQQQIHHIKN LYAFNLFCQK 360
  361 RFDESMQVFA KLGTDPTHVM GLYPDLLPTD YRKQLQYPNP LPTLSGAELE KAHLALIDYL 420
  421 TQKRSQLVKK LNDSDHQSST SPLMEGTPTI KSKKKLLQII DTTLLKCYLH TNVALVAPLL 480
  481 RLENNHCHIE ESEHVLKKAH KYSELIILYE KKGLHEKALQ VLVDQSKKAN SPLKGHERTV 540
  541 QYLQHLGTEN LHLIFSYSVW VLRDFPEDGL KIFTEDLPEV ESLPRDRVLN FLIENFKALA 600
  601 IPYLEHIIHV WEETGSQFHN CLIQLYCEKV QSLMKDYLLS LPTGKSPVPA GEEGGELGEY 660
  661 RQKLLMFLEI SSHYDPGRLI CDFPFDGLLE ERALLLGRMG KHEQALFIYV HVLKDTKMAK 720
  721 EYCHKHYDQN KEGNKDVYLS LLRMYLSPPS IHCLGPIKLE LLEPQANLQA ALQVLELHYS 780
  781 KLDTTKAINL LPANTQINDI RIFLEKVLEE NAQKKRFNQV LKNLLHAEFL RVQEERILHQ 840
  841 QVKCIITEEK VCMVCKKKIG NSAFARYPNG VVVHYFCSKE VNSADT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle