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Protein Overview: gi|115457694, gi...

General Information:
Name(s) found: gi|115457694 [NCBI NR]
gi|113564018 [NCBI NR]
Description(s) found:
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  • gi|115457694|ref|NP_001052447.1| Os04g0316800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113564018|dbj|BAF14361.1| Os04g0316800 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • Os04g0316800 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 1134 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKKMSRLEL DAGVSLWAGL QPDILGIVLH FLPCLADRAR VRSFSSLSDK GDFMPVRCVP  60
   61 VPKEVAADDL RCVGSFHGWL VGVTPNKDRS DEYNRDADGD CFLVNVFSRK VIRLPQLCHM 120
  121 RYNFPAYSSK TLRIVNGSGE VHFGVNDIYT MSLCNVALSA SPESSKYIVA ASSDHKGAPV 180
  181 PALWQPGMIS WQVCSGVEID GPRDLSFYQG KLYMLMRHRT RLFTCELEED DRGFMVSRIE 240
  241 LSLTELPRNH PYQEGGAISC NMVVWRGELL LIIRHYNGDY RKRQLHKVEV FALDVDTNPY 300
  301 GLTEIHSLNG DCIFVGLGGC KSFPAGLHHG VEGDHIYFVP DDWRPYDTFV YSMRDAGVWK 360
  361 PTAGALPEFD LRKENPCNTD QSEQNKNTDQ GGLKAELRRS ISCLTKAGVD TVPQFLPQPR 420
  421 RLARLRRRPY RIGSHLRFAS QVRSDIMTSS YVSLEDQEEY KMMGTVVFSS EEEGYKFYLD 480
  481 YAKGKGFSVR KNNLKRKDGE IIWRQFVCSC EGYRELKHFE RTERIREPRA LTRCGCLAKL 540
  541 EIERNEEKGV WFVKEFDNQH THELANPDHV AFLGVHRVMS DSKKAQAVEL RMSGLRPFQV 600
  601 MEVMENNHDE LDEVGFVMKD LYNFFTRYDM KNIKGHDAED VLKYLTRKQE EDAEFFFKYT 660
  661 TDEEGRLRNV FWADAESRLD YAAFGGVVIF DSTYRVNKYN LPFIPFIGVN HHRSTTIFGC 720
  721 GILSNESVNS YCWLLETFLE AMRQVHPKSL ITDGDLAMAK AISKVMPGAY HRLCTWHIEE 780
  781 NMSRHLRKPK LDELRKLIYE SMDEEEFERR WADFKENGGT GNGQWIALMY RLREKWAAAY 840
  841 TDGKYLLGMR SNQRSESLNS KLHTLLKRNM SLMCLVKHVK LCIQGLRKKE AQLDAKSTNS 900
  901 VPFCRIDADP LEKDAARIYT AVVFKKVRAQ IRLIAGLEVI SGTNQDGSSL YVVGLKDDNE 960
  961 VWDEVRVSFK GQALEGVECH CRKMECEDIP CSHIFVVVKF LGFDTIPRCC VVDRWTMGAK1020
 1021 AAFRSDRNAD PNVWSEHMVR YRSLRNLGSD AFFEAARNPE QTEKAMDFLK GILDKGSSSD1080
 1081 ENIVAGDFGP MPTHFSSSNQ PLEKRVLDPE EIRAKGAPSK RRRPFRETLH TNNQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..178] MSA 8.348996 View MSA. No confident structure predictions are available.
    2 View Details [179..295] deduced N/A No confident structure predictions are available.
    3 View Details [296..393] Pfam 14.552842 No description for PF03478.10 was found. No confident structure predictions are available.
    4 View Details [394..456] deduced N/A No confident structure predictions are available.
    5 View Details [457..564] Pfam 39.221849 No description for PF03101.7 was found. No confident structure predictions are available.
    6 View Details [565..663] deduced N/A No confident structure predictions are available.
    7 View Details [664..800] Pfam 41.481486 No description for PF10551.1 was found. No confident structure predictions are available.
    8 View Details [801..962] MSA 4.721992 View MSA. No confident structure predictions are available.
    9 View Details [963..1134] MSA 5.434989 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.42

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle