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Protein Overview: gi|90399241

General Information:
Name(s) found: gi|90399241 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|90399241|emb|CAH68315.1| B0811B10.16 [Oryza sativa (indica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Indica Group
    Length: 605 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPNLESHIK SQVPALLLRR FFGGAGRRRV FVQTETGCVL GMDLDRSDNA HTVKRRLQLA  60
   61 LNVPTGETSL TFGDRVLEND LSFIRPDSPL LLTRNSINRS CSTPCLCPVS KDFEHKDRSG 120
  121 LVEMLGCSIS CARVKRLVDD VVTAIRSGVD PVPIGSGLGG SYYFRNISGD RVAIVKPTDE 180
  181 EPFAPNNPKG FVGRALGQPG LKKSVRVGET GFREVAAYLL DHDNFANVPP TALVKITHSI 240
  241 FHINCPVNGG SPAHDQKQQV SSKIASFQQF IAHDFDASDH GTSSFPVAAV HRIGILDIRI 300
  301 FNTDRHAGNV LVRKLDGGTG RFGCQTELFP IDHGLCLPEN LEDPYFEWIH WAQSSIPFSE 360
  361 EELEYIKNLD PMRDVAMLRR ELPIIREACL RVLVLCTIFL KEAAASGLCL AEIGEMMTRE 420
  421 FRGLEEEPSK LEVVCMEARR KLAEWEPYSP VIEQGEDMDF QFSLDMLGEY NDVIRSPRFN 480
  481 GLGAKGNGFR NPLSKLVESI DEDNDDDDGR SESSKRSSER VHSGGLKFPS ADKSSGSNGS 540
  541 VHALNRSADE QLPSSVYFVR LSDMNAEEWN IFLEKFQELL KEALQERAAA AGQRMKQRLG 600
  601 TSCKF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..148] PSI-BLAST 4.69897 Structure of the DNA repair protein hHR23a
    2 View Details [149..246] deduced N/A No confident structure predictions are available.
    3 View Details [247..445] MSA 3.076961 View MSA. No confident structure predictions are available.
    4 View Details [446..605] MSA 1.029964 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle