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Protein Overview: NG06_SCHPO

General Information:
Name(s) found: NG06_SCHPO [Swiss-Prot]
Description(s) found:
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  • gi|19115736|ref|NP_594824.1| hypothetical protein SPAC890.06 [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • Probable nucleoporin C890.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC890.06 PE=3 SV=3 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 1315 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDINDPSFSS TENGIYELLS RGYAAIEAAT ERDLKLPELG DIIGQVHAPE YISQVLSGWK  60
   61 PFYLRSVVNI PDRIFEQYNR TECFTQMGLF AEIQRAWITV DNRLFLWDYL SGQNFQAYED 120
  121 LSHTIVNVKL VRPKANVFVS EIQHLLVIAT SQEMLLLGVT IDEKTGELSF FSTGIQISVQ 180
  181 GINVNCIVSS EDGRIFFSGN KDPNLYEFSY QLEEGWFSRR CSKINITGSV FDNFIPSFFS 240
  241 FGTHGDGIKQ IAVDDSRSLL YVLRETSSVS CYELTKNGVN RCVFYSFSSM ISQAQMLNAT 300
  301 SPLLDPRTTQ IVSIVPIPAY ESQQIYCVAI TSTGCRFYMR GGRGPISHYA PSNSTLSSTP 360
  361 PSTLQLTFVR FPPPMQVENY ASSRNYPANP FFLQNQSTSQ QQPERSSAVK TTPMKCSSLS 420
  421 NIYTSDLFFA ISSSNTNEGD VVCCTAPEVG RIANAWQSGT QPSLIESSMY VPIKGFVQDI 480
  481 KCIQNSRERN ELVSQFNTPP PTFAILTNTG VYVVVHRRPI DVLASAIRMG PSLSSGIDGQ 540
  541 VQLFFESVGR AEGCATCLGI VSGCLDQGDF SHAAANFSGS TTKLAQADLL DIVKKYYIEF 600
  601 GGKAFIDQSR YNNQYDSSSL EFVRLSGCHD GLASSISRII RNVWKNHVII AKKMQNKRIH 660
  661 YAPAFNATEI LKIQSGLLYL STFLENNKSF IEGLNSPNTL IGSSNVADEI AVQAEHRALS 720
  721 ALLLVLQQIV EGISFLLFLN DTGVSDFHEI VSSTSIDIQK SCSNMTFGEF FTSKRGREVT 780
  781 KELVNSLVNR HLQSGGNIDM VSQLLRKKCG SFCSADDVLI FKAVESLKKA KDTVDIEERQ 840
  841 SLIELSYTLF KKAAHVFTPE DLRLAVEEYK SLNAYTTAVN LALHVASARD DRNQALSYLV 900
  901 DGMPENDPRR EPFESRTKCY SYIFEILDSL ESQMSNDSSA IKVDVYDTIQ RSKDELFHYC 960
  961 FYDWYSFKGL TDRLIEIDSP YIQSYLERNS TKDMKIADLL WQYYAKREQY YQASIVLYDL1020
 1021 ATTHLAFSLE QRIEYLTRAK GFGSCHVPNS LRHKMNKVML SVLEQLDVAS IQDDVLIAIR1080
 1081 GDMRIPTSKR EELSKQLDGE IIPLSDLFNN YADPLGYGEI CLSIFQCADY RGINEILNCW1140
 1141 ESIIKTTHEN AIISPVGSSP VEAVSSTLKN LTLRFSQSEN VFPIEQIIDI TERYAFDQQG1200
 1201 EAVATGWVID TFLGAGVSHE LIFIVLNQLY DRREKPWQGK DRLFFLIKEV THLLKLWHEV1260
 1261 SVRAGVAQTS KPSFDAPLVL EAIEKYKNAL GAPDTATKSC KENLISLDSE IRQTY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..85] deduced N/A No confident structure predictions are available.
    2 View Details [86..236] MSA 2.041986 View MSA. No confident structure predictions are available.
    3 View Details [237..323] MSA 1.042991 View MSA. No confident structure predictions are available.
    4 View Details [324..579] deduced N/A No confident structure predictions are available.
    5 View Details [580..711] deduced N/A No confident structure predictions are available.
    6 View Details [712..822] MSA 1.036993 View MSA. No confident structure predictions are available.
    7 View Details [823..952] MSA 1.03897 View MSA. No confident structure predictions are available.
    8 View Details [953..1181] MSA 1.037989 View MSA. No confident structure predictions are available.
    9 View Details [1182..1315] MSA 2.038967 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

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    Created and Maintained by: Michael Riffle