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Protein Overview: NUP40_SCHPO

General Information:
Name(s) found: NUP40_SCHPO [Swiss-Prot]
Description(s) found:
Found 2 descriptions.
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  • Nucleoporin nup40 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nup40 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 371 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFGGSGSIT NRSTLKPLSV DDLRSPSPQK EYRGFRTSVS NIPQEKKFVP SHLSHFGSSQ  60
   61 QRRFAPEVSS PLAEPYESSS SFRLSLSSPP SSKFGGPSFG TPKPFLHTNR LGTGSLIEDA 120
  121 PPTQSIYDFS SSRQINALNV GQSSSPFSPV SEKVYDPSFT MSGAPQDSNT SVIVFGFPPE 180
  181 LTNQVIAEFS RFGTIISENS LTASSAGFTP SKGPISGNWL QLTYAEPSSA AKAVLSNGML 240
  241 INDSFMVGCI YSPAEAKEHV PKTLRNSNKD LEMTDASSSE TSMSIPVHAD AHFQSQSGLG 300
  301 KKVIVQHKND IFKSSQKHQP RNWLFHYLFG FGSTEPIDEE EKSKTASDNT SLQTSLFGKI 360
  361 VQVVLHTLFG F

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..147] MSA 1.027972 View MSA. No confident structure predictions are available.
    2 View Details [148..272] PSI-BLAST 32.09691 Crystal structure of the MPPN domain of mouse Nup35
    3 View Details [273..371] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle