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Protein Overview: SF3B5_MOUSE

General Information:
Name(s) found: SF3B5_MOUSE [Swiss-Prot]
Description(s) found:
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  • gi|85540445|ref|NP_780311.2| splicing factor 3b, subunit 5 [Mus musculus] [NCBI NR]
  • gi|26385381|dbj|BAC25037.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|26366599|dbj|BAC25275.1| unnamed protein product [Mus musculus] [NCBI NR]
  • gi|20140644|sp|Q923D4.1|SF3B5_MOUSE RecName: Full=Splicing factor 3B subunit 5; Short=SF3b5; AltName: Full=Pre-mRNA-splicing factor SF3b 10 kDa subunit [NCBI NR]
  • gi|13879270|gb|AAH06603.1| Splicing factor 3b, subunit 5 [Mus musculus] [NCBI NR]
  • Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=1 SV=1 [Swiss-Prot]
  • (Q923D4) Splicing factor 3B subunit 5 (SF3b5) (Pre-mRNA splicing factor SF3b 10 kDa subunit) [Swiss-Prot]
  • Ensembl_locations(Chr-bp):10-12724217 Splicing factor 3B subunit 10 [hmr_yeast5_DM3-1_pombe.fasta]
  • Sf3b5 protein [Mus musculus]gi|20140644|sp|Q923D4|S3B5_MOUSE Splicing factor 3B subunit 5 (SF3b5) (Pre-mRNA splicing factor SF3b 10 kDa subunit)gi|26366599|dbj|BAC25275.1| unnamed protein product [Mus musculus]gi|26385381|dbj|BAC25037.1| unnamed protei [nrdb_11152004_Chlamydomonas]
  • Splicing factor 3B subunit 5 [ipi.MOUSE.v3.06.fasta]
  • Tax_Id=10090 Splicing factor 3B subunit 5 [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • splicing factor 3b, subunit 5 [Mus musculus] [NCBI-RefSeq_mouse_na_03-19-2007_reversed.fasta]
  • Splicing factor 3B subunit 5 (SF3b5) (Pre-mRNA-splicing factor SF3b 10 kDa subunit) [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • unnamed protein product [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Splicing factor 3b, subunit 5 [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 SPLICING FACTOR 3B SUBUNIT 5 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Sf3b5 Splicing factor 3B subunit 5 [mouse-ipi-250309-contam.fasta]
  • Tax_Id=10090 Gene_Symbol=Sf3b5 Splicing factor 3B subunit 5 ENSMUSG00000078348 IPI00311948 [IPIxENS.MOUSE_plus_REVERSE.fasta]
  • splicing factor 3B subunit 5 [Mus musculus] [NCBI-RefSeq_mouse_na_05-17-2010_reversed.fasta]
  • IPI:IPI00311948.3|SWISS-PROT:Q923D4|TREMBL:Q8CEW9|ENSEMBL:ENSMUSP00000100771|REFSEQ:NP_780311 Tax_Id=10090 Gene_Symbol=Sf3b5 Splicing factor 3B subunit 5 [ipi.MOUSE.fasta.20090209]
  • Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 [011711_HMR.fasta]
  • Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1 [UniProt_mouse_sprotvarsplic_11-08-2010_reversed.fasta]
  • sp|Q923D4|SF3B5_MOUSE Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1 [uniprot.sptr.mouse.20130102]
    • Organism: Mus musculus
    Length: 86 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDRYTIHSQ LEHLQSKYIG TGHADTTKWE WLVNQHRDSY CSYMGHFDLL NYFAIAENES  60
   61 KARVRFNLME KMLQPSGPPA DKPEEN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..86] Pfam 60.09691 No description for PF07189.2 was found. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle