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Protein Overview: gi|5823131, gi|2...

General Information:
Name(s) found: gi|5823131 [NCBI NR]
gi|22094117 [NCBI NR]
Description(s) found:
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  • gi|5823131|gb|AAD53049.1|AF127245_1 Smcx [Mus musculus] [NCBI NR]
  • gi|22094117|ref|NP_038696.1| jumonji, AT rich interactive domain 1C (Rbp2 like) [Mus musculus] [NCBI NR]
  • Ensembl_locations(Chr-bp):None Splice isoform 2 of P41230 SmcX protein [hmr_yeast5_DM3-1_pombe.fasta]
  • jumonji, AT rich interactive domain 1C (Rbp2 like); selected mouse cDNA on the X [HMR_022704-rand.fasta]
  • Splice Isoform 2 of Jumonji/ARID domain-containing protein 1C [ipi.MOUSE.v3.06.fasta]
  • jumonji, AT rich interactive domain 1C (Rbp2 like) [Mus musculus]gi|5823131|gb|AAD53049.1| Smcx [Mus musculus] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=10090 Splice Isoform 2 of Jumonji/ARID domain-containing protein 1C [EBI-IPI_mouse_3.17_05-10-2006_con_reversed.fasta]
  • (NM_013668) selected mouse cDNA on the X [Mus musculus] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • jumonji, AT rich interactive domain 1C (Rbp2 like) [Mus musculus] [mouse-NCBI-010306_contam_rand.fasta]
  • Smcx [Mus musculus] [NCBI-RefSeq_multi-organisms_na_08-12-2008_con_reversed.fasta]
  • Tax_Id=10090 SPLICE ISOFORM 2 OF JUMONJI/ARID DOMAIN-CONTAINING PROTEIN 1C [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Jarid1c Isoform 2 of Jumonji/ARID domain-containing protein 1C [zeeyong.fasta]
    • Organism: Mus musculus
    Length: 1551 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELGSDDFLP PPECPVFEPS WAEFRDPLGY IAKIRPIAEK SGICKIRPPA DWQPPFAVEV  60
   61 DNFRFTPRIQ RLNELEAQTR VKLNYLDQIA KFWEIQGSSL KIPNVERRIL DLYSLSKIVV 120
  121 EEGGYETICK DRRWARVAQR LNYPPGKNIG SLLRSHYERI VYPYEMYQSG ANLVQCNTRP 180
  181 FDNEEKDKEY KPHSIPLRQS VQPSKFNSYG RRAKRLQPDP EPTEEDIEKN PELKKLQIYG 240
  241 AGPKMMGLGL MAKDKTLRKK DKEGPECPPT VVVKEELGGD VKMESTSPKT FLEGKEELSH 300
  301 SPEPCTKMTM RLRRNHSNAQ FIESYVCRMC SRGDEDDKLL LCDGCDDNYH IFCLLPPLPE 360
  361 IPKGVWRCPK CVMAECKRPP EAFGFEQATR EYTLQSFGEM ADSFKADYFN MPVHMVPTEL 420
  421 VEKEFWRLVN SIEEDVTVEY GADIHSKEFG SGFPVSDSKR HLTPEEEEYA TSGWNLNVMP 480
  481 VLEQSVLCHI NADISGMKVP WLYVGMVFSA FCWHIEDHWS YSINYLHWGE PKTWYGVPSL 540
  541 AAEHLEEVMK KLTPELFDSQ PDLLHQLVTL MNPNTLMSHG VPVVRTNQCA GEFVITFPRA 600
  601 YHSGFNQGYN FAEAVNFCTA DWLPAGRQCI EHYRRLRRYC VFSHEELICK MAACPEKLDL 660
  661 NLAAAVHKEM FIMVQEERRL RKALLEKGIT EAEREAFELL PDDERQCIKC KTTCFLSALA 720
  721 CYDCPDGLVC LSHINDLCKC SSSRQYLRYR YTLDELPAML HKLKVRAESF DTWANKVRVA 780
  781 LEVEDGRKRS LEELRALESE ARERRFPNSE LLQRLKNCLS EAEACVSRAL GLVSGQEAGP 840
  841 DRVAGLQMTL AELRDFLGQM NNLPLAMHQI GDVKGILEQV EAYQTEAREA LVSQPSSPGL 900
  901 LQSLLERGQQ LGVEVPEAQQ LQRQVEQARW LDEVKRTLAP SARRGTLAIM RGLLVAGASV 960
  961 APSPAVDKAQ AELQELLTIA ERWEEKAHLC LEARQKHPPA TLEAIIHEAE NIPVHLPNIQ1020
 1021 SLKEALAKAR AWIADVDEIQ NGDHYPCLDD LEGLVAVGRD LPVGLEELRQ LELQVLTAHS1080
 1081 WREKASKTFL KKNSCYTLLE VLCPCADAGS DSTKRSRWME KELGLYKSDT ELLGLSAQDL1140
 1141 RDPGSVIVAF KEGEQKEKEG ILQLRRTNSA KPSPLALLTT ASSTASICVC GQVPAGVGAL1200
 1201 QCDLCQDWFH GRCVTVPRLL SSQRSSLPSS PLLAWWEWDT KFLCPLCMRS RRPRLETILA1260
 1261 LLVALQRLPV RLPEGEALQC LTERAISWQG RARQVLASEE VTALLGRLAE LRQRLQAESK1320
 1321 PEESLAYPSD GGEGTGNMPK VQGLLENGDS VTSPEKVATE EGSDLELLSS ILPQLSGPVL1380
 1381 ELPEATRAPL EELMMEGDLL EVTLDENHSI WQLLQAGQPP DLKRVQTLLE LEKAERHGSR1440
 1441 TRGRALERRR RRKVDRGGEP DDPAREELEP KRVRSSGPEA EEVQEEEELE EETGGEVPPV1500
 1501 PFPNSGSPSI QEDQDGLEPV LEAGSDTSAP FSTLTSRLLM SCPQQPSLQQ L

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle