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Protein Overview: TPS1_ORYSJ

General Information:
Name(s) found: TPS1_ORYSJ [Swiss-Prot]
Description(s) found:
Found 6 descriptions.
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  • Probable thiamine biosynthetic bifunctional enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=Os12g0192500 PE=2 SV=2 [Swiss-Prot]
    • Organism: Oryza sativa Japonica Group
    Length: 548 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAPQQSVH PSLPSSTSTL RLLISSSPRR PPPPPPRARR YNRLAASASA AREMPWPHVL  60
   61 TVAGSDSGGG AGIQADIKAC AALGAYCSSV VTAVTAQNTA GVQGIHVVPE EFIREQLNSV 120
  121 LSDMSVDVVK TGMLPSIGVV RVLCESLKKF PVKALVVDPV MVSTSGDTLS ESSTLSVYRD 180
  181 ELFAMADIVT PNVKEASRLL GGVSLRTVSD MRNAAESIYK FGPKHVLVKG GDMLESSDAT 240
  241 DVFFDGKEFI ELHAHRIKTH NTHGTGCTLA SCIASELAKG ATMLHAVQVA KNFVESALHH 300
  301 SKDLVVGNGP QGPFDHLFKL KCPPYNVGSQ PSFKPDQLFL YAVTDSGMNK KWGRSIKEAV 360
  361 QAAIEGGATI VQLREKDSET REFLEAAKAC MEICKSSGVP LLINDRVDIA LACNADGVHV 420
  421 GQLDMSAHEV RELLGPGKII GVSCKTPAQA QQAWNDGADY IGCGGVFPTS TKANNPTLGF 480
  481 DGLKTVCLAS KLPVVAIGGI NASNAGSVME LGLPNLKGVA VVSALFDRPS VVAETRNMKS 540
  541 ILTNTSRT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..330] PSI-BLAST 58.522879 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase (HMP-phosphate kinase, ThiD)
    2 View Details [331..548] PSI-BLAST 45.0 Thiamine phosphate pyrophosphorylase from Pyrococcus furiosus Pfu-1255191-001

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • phosphomethylpyrimidine kinase activity
    		•  4.17236703133163 bayes_pls_golite062009
  • phosphotransferase activity, phosphate group as acceptor
    		•  2.49796023165143 bayes_pls_golite062009
  • catalytic activity
    		•  2.11518580948187 bayes_pls_golite062009
  • kinase activity
    		•  1.91132546835432 bayes_pls_golite062009
  • transferase activity
    		•  1.65599843675995 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  1.53929419091344 bayes_pls_golite062009
  • thiamin-phosphate diphosphorylase activity
    		•  1.41576214895876 bayes_pls_golite062009
  • phosphotransferase activity, alcohol group as acceptor
    		•  0.5044241713613 bayes_pls_golite062009
  • hydroxyethylthiazole kinase activity
    		•  0.44128654727966 bayes_pls_golite062009
  • binding
    		•  0.0820659188236261 bayes_pls_golite062009
    2
    Term Confidence Notes
  • thiamin-phosphate diphosphorylase activity
    		•  6.04450222340788 bayes_pls_golite062009
  • catalytic activity
    		•  2.31352397210218 bayes_pls_golite062009
  • phosphomethylpyrimidine kinase activity
    		•  2.16632642989285 bayes_pls_golite062009
  • transferase activity, transferring alkyl or aryl (other than methyl) groups
    		•  1.16976945211093 bayes_pls_golite062009
  • transferase activity
    		•  1.16478613213801 bayes_pls_golite062009
  • phosphotransferase activity, phosphate group as acceptor
    		•  0.63318404518052 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.93

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle