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Protein Overview: gi|108864208

General Information:
Name(s) found: gi|108864208 [NCBI NR]
Description(s) found:
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  • gi|108864208|gb|ABA92485.2| RWP-RK domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • RWP-RK domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 858 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMLMLSSAL DGLDSYTDLV AGSSVADSIF SALTCFPPSQ ERLLHVSTPV GSNSRQDDSD  60
   61 VSITKEGTTT RRGDCAAGLA SGEPVAAGIG SVPKPFDGVT LTERMLRALA MLKEASGGEA 120
  121 ILVQVWMPVR NGEQHVLTTS DQPFLLDQKL TGYREVSRQF TFSAEEGPGL FPGLPGRVFM 180
  181 SGMPEWTSNV MYYHGSEYLR VDYARRHEVR GSLAMPVFNS SGGSCCAVLE VVMTREKDNF 240
  241 CLEMVNVSNA LQSVQLSTVN AWRHSQSYSR DQKLALMEIF DVLQAVCQAH LLPLALAWIP 300
  301 VCSKRDVLVS VEYGANFGKR NKEVLCIEES ACYVNDTRMR DFVQVCAEHP LEKGQGVAGN 360
  361 AYLSNNPFFS SDVKDYDMHA YPLVNHARKF GLHAAVAIRL QSTYTKNDDY VLEFFLPVLC 420
  421 KGGGEQQLLL DSISATMRRV CKSLRTVSDA ELKEDVTRKP SNENRSGTRC PSPVNLIYSG 480
  481 REIDVSNETK TNTPLEYQIE GIDEQLSDTK STNKLIKCSN ASDGEKRRSS TEKSVSLSVL 540
  541 QQYFSGSLKD AAKSIGVCPT TLKRICRQHG ISRWPSRKIK KVNRSLKKIQ NVISSVHGVE 600
  601 GVLKYDPSTG CLVSSVSPSI EPVLMNVEHK GQDVLHKLQN KQNGEINFDM DDGELFRNSH 660
  661 STRTLSGAFC EDMPNGLYVA REMTCVAKTG TRTERLEHKP SSRDSFSAPQ EYRMESETDK 720
  721 SNKNSKQSLP SSSSMTDCST SSGETFKSIK SQSANESNKT VVVKASYKND TIRFKLLPSM 780
  781 KYEQLLEEIA KRLKLSIGLF QLKYKDDEGD WVILASDADL QECLEILDTT RLRILKLQVQ 840
  841 DVVCPIGSSS GSCSMLRP

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..117] deduced N/A No confident structure predictions are available.
    2 View Details [118..267] MSA 3.042964 View MSA. No confident structure predictions are available.
    3 View Details [268..507] MSA 1.087992 View MSA. No confident structure predictions are available.
    4 View Details [508..631] Pfam 30.167491 No description for PF02042.7 was found. No confident structure predictions are available.
    5 View Details [632..755] deduced N/A No confident structure predictions are available.
    6 View Details [756..858] PSI-BLAST 21.39794 Solution Structure of the PB1 domain of PKCiota


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.88

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle