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Protein Overview: gi|108708143

General Information:
Name(s) found: gi|108708143 [NCBI NR]
Description(s) found:
Found 2 descriptions.
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  • gi|108708143|gb|ABF95938.1| Superoxide dismutase 1, putative, expressed [Oryza sativa (japonica cultivar-group)] [NCBI NR]
    • Organism: Oryza sativa Japonica Group
    Length: 230 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQVISDELR LSPLTGRALN TGQRRIYPVV PNYLDTGSSA KELGVTERRQ SVTLGARALN  60
   61 VGWWLQLQAA SLTTNTTAHR WREGNLPEAP DSKPAGVASP PPSSSSSSPR GSPEITLTMV 120
  121 KAVVVLGSSE IVKGTIHFVQ EGDGPTTVTG SVSGLKPGLH GFHIHALGDT TNGCMSTGPH 180
  181 YNPAGKEHGA PEDETRHAGD LGNVTAGEDG LFFFPLFRIF ICSIPVNDLT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..104] PSI-BLAST 13.154902 The apo form of HMA domain of copper chaperone for superoxide dismutase
    2 View Details [105..230] PSI-BLAST 33.0 Cu,Zn superoxide dismutase, SOD

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2
    Term Confidence Notes
  • catalytic activity
    		•  0.562280991045371 bayes_pls_golite062009
  • oxidoreductase activity
    		•  0.0917283684559798 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle