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Protein Overview: gi|94365373

General Information:
Name(s) found: gi|94365373 [NCBI NR]
Description(s) found:
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  • gi|94365373|ref|XP_985045.1| PREDICTED: similar to alpha 3 type VI collagen isoform 1 precursor [Mus musculus] [NCBI NR]
  • PREDICTED: similar to alpha 3 type VI collagen isoform 1 precursor [Mus musculus] [NCBI-RefSeq_mouse_na_03-19-2007_reversed.fasta]
  • Tax_Id=10090 Gene_Symbol=Col6a3 similar to alpha 3 type VI collagen isoform 1 precursor [zeeyong.fasta]
    • Organism: Mus musculus
    Length: 3260 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFKDVKNG AAADIVFLVD SSWSAGKDRF LLVQEFLSDV VESLAVGDND FHFALVRLNG  60
   61 NPHTEFLLNT YHSKQEVLSH IVNMSYIGGS NQTGKGLEYV IHSPLTEASG SRAADGVPQV 120
  121 IIVLTDGQSE DGFALPSAEL KSADVNVFAV GVEGADERAL GEVASEPLSM HVFNLENVTS 180
  181 LHGLVGNLVS CIHSSVNPER AGDKESLKDI TAQDSADIIF LIDGSQNTGN ANFDVIRDFL 240
  241 VNVLERLSVG NQQVQVGVVQ YSEEPITMFS LNSYPSKAAV LDAVKGLSLV GGESANIGQA 300
  301 LDFVVENHFT RAGGSRVEEG VPQVLVLISA GPSSDEIRDS VVALKQASVF SFGLGAQAAS 360
  361 RAELQHIATD DSLVFTVPEF RSFGDLQEQI LPYLVGVAQR HIVLQPPAIV TQVMEVNKRD 420
  421 IVFLVDGSSS LGPSNFNAIR DFVTRVIQRL EIGQDLVQVS VAQYADTVKP EFYLNSYTNK 480
  481 RDAITAVRKM RALNGSALYT GSSLDFVRNN LFTSSAGHRA AEGVPKLLVL ITGGKSLDEV 540
  541 SQPAQELKRG SIMALAVGSK AADEDELKEI AFDSSLVFIP AEFRPAPLQN MLPSLMAPLR 600
  601 TLTGTTEVHV NKRDIIFLLD GSDNVGKNNF PYVRDFVTNL VNSLDVGSDN IRVGLVQFSD 660
  661 TPVTEFSLDT YQTKSELLAH LRRLQLKGGS GLNAGSALSY IHANHFTEAG GSRTREHVPQ 720
  721 LLLLLMAGPS EDAYLQAANA LVRSGVLTFC VGTNRADKAE LEHIAFNPSL VYLMDDFRSL 780
  781 PSLPQQLIQP LTTYVSGGVQ EVPLSQPESK RDILFLFDGS VNVLGQFPAV RDFLYRIIEE 840
  841 LDVKPDGTRV AIAQFSDDVR LESRFSEHQT KAEILNLVKK MKLKTGKALN LGYALDYALR 900
  901 NIFVRSAGSR IEDNVQQFLV LLVAGRSSDA VAGPASSLKQ RGVVPFIFQA KNANPSELEQ 960
  961 IVLSPAFILA AESLPKIGDL QSQIVSLLKA EQGSGPVSGE KDVVFLIDGS EGVRSGFPLL1020
 1021 KDFVQRVVES LDVGPDRVRV ALVQYSDRTR PEFYLNSHMD QQGVISAIRR LTLLGGPTPN1080
 1081 TGAALEFVLR NILTSSTGSR IAEGVPQLLI VLTAEPSGDD VRGPSVVLKQ GGAVPIGIGI1140
 1141 GNADISEMQT ISFIPDFAVA IPTFRELGTI QQVISERVIQ LNREELSSLK PILTPSTGAG1200
 1201 VGSKKDVVFL IDGSRNAGPE FQYIRTLIER IVEYLDIGFD TTRVAVIQFS EDSKMEFPLN1260
 1261 AHFSKDEVQN AVRRLRPKGG SQVYIGNALE YVLKNIFQRP LGSRIEEGVP QFLVLISSGK1320
 1321 SDDEVDDSAV ELKQFGVAPL TIARHTDQEE LVKISLSPEY VYSVSTFREL PRLEQKLLTP1380
 1381 ITTLTSQQIH QILASTRYPP SVVESDAADI VFLIDSSDAV KPDGIAHIRD FVSRIVRRLN1440
 1441 IGPSKVRIGV VQFSNDVFPE FYLKTHKSQS SVLEAIRRLR FKGGSPLNTG RALEFVARNL1500
 1501 FVKSAGSRIE DGVPQHLVLF LGGKSQDDVA RHAQVISSSG IVSLGIGDRN IDRTDLQTIT1560
 1561 NDPRLVFTVR EFRELPNIEE RVMLSFGPSG ATPQPPGVDL PSPSRPEKKK ADIVFLLDGS1620
 1621 INFRRDSFQE VLRFASEIVD TVYEDGDSIR VGLVQYNSDP TDEFFLRDFS TKRQIIDAIN1680
 1681 KVVYKGGRHA NTRVGIEHLL RNHFVPEAGS RLDERVPQIA FVITGGKSVE DAQDVSLALT1740
 1741 QKGVKVFAVG VRNIDSEEVG KIASNSATAF RVGSVQELSE LSETVLETLH DAMHETLCPG1800
 1801 VTDVSKACNL EVILGFDGSR DQNVFVSQKG LESKVDIILN RISQIQRISC SGNQLPTVRV1860
 1861 SVMANTPSGP VEAFDFAEYQ PELFEKFRNM RSQRPYVLTA DTLKLYQNKF RQSSPDTVKV1920
 1921 VIHFTDGADG DMADLYRASE ELRQAGAQAL ILVGLERVAN LERLMHLEFG RGFMYDRPLR1980
 1981 LNLLDLDYEL AEQLDNIAEK ACCGVPCKCS GERGDRGPIG SIGPKGISGE DGYRGYPGDE2040
 2041 GGPGERGPPG VNGTQGFQGC PGQRGVKGSR GFPGEKGELG EIGLDGLDGE EGDKGLPGSS2100
 2101 GEKGSPGRRG DKGPKGDKGE RGDVGIRGDP GDSGRDSQQR GPKGETGDIG PMGLPGRDGI2160
 2161 PGSPGDPGKD GGSGRRGPAG AKGNRGGPGQ PGFEGEQGTR GSQGPPGPIG PPGLIGEQGI2220
 2221 PGPRGGGGTA GAPGERGRTG PLGRKGEPGE PGPKGSIGNR GPRGETGDDG RDGVGSEGRR2280
 2281 GKKGERGFPG YPGPKGTPGE PGADGPPGPK GIRGRRGNSG PPGATGQKGD PGYPGPSGHK2340
 2341 GNRGDSVDQC ALIQSIRDKC PCCYGPLECP VFPTELAFAL DTSEGVTQDT FSRMREVLLG2400
 2401 IVGDLTIAES NCPRGARVAV VTYNNEVTTE IRFADSKKKS ALLDSIQNLQ VALTSKQQSL2460
 2461 ETAMSFVARN TFKRVRSGFL MRKVAVFFSN KPTRASPQLR EAVLKLSDAG ITPLFLTSQE2520
 2521 DRQLINALQI NNTAVGHALV LPARRDLTDF LKNVLTCHVC LDICNIDPSC GFGSWRPSFR2580
 2581 DRRAAGSDVD IDLAFILDSS EATTLFQFNE MKKYIGYVIR QLDLSPDPKA SQHFARVAVV2640
 2641 QQSTYESVDN ASVPPVKVEF SLTDYGAKEK LLDFLSRRMT QLQGTMGLGN AIEYTIENIF2700
 2701 ESAPNPRDLK IMVLMLTGDM QRQQLEEAQR AILQAKCKGY FFVVLGIGRK VNIKEVYSFA2760
 2761 SEPNDVFFKF VDKSTELNEE PLMRFGRLLP SFVSSENAFY LPPDLRKQCD WFQGDQPVKN2820
 2821 GVKFGHKQIN PPHTANSSLT SKVVTTMKPV TTTKPTAIVN LPPAKPAPAR PAPAQPVLAK2880
 2881 PDPAKPAQAR PAPAKPASAK LVPPQPVHVQ PAPAQTASVR PAPAKPAPPQ PAAAKPVPAK2940
 2941 PAVPAQPAPP QPAAAKPVPA KPAVPAQPAP PQPAAAKPVP AKPAVPAQPA AAQPMPAQPV3000
 3001 LTKSAAVKPA SANKPVAAKP VATNTATATA RPALAAKPAA AKPAATRPLA AAIRPVATKP3060
 3061 EAPRQQAKPA ATKPATTKPL ARVSREVQVS EVTENSARLH WERPEPSSSF FYDLTVTSAH3120
 3121 DQSLVLRQNL TVTDRVIGGL LAGQLYHVVV VSYLQSQVRA IYQGSFNTKK TQPPPLQAAH3180
 3181 RASSSTINLM VNTEPLFLTK TDICKLSRDA GTCVDFKLLW HYDLESKSCK RFWYGGCGGN3240
 3241 ENRFHSQEEC EKMCSPELTV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.72

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle