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Protein Overview: gi|115458196, gi...

General Information:
Name(s) found: gi|115458196 [NCBI NR]
gi|113564269 [NCBI NR]
Description(s) found:
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  • gi|115458196|ref|NP_001052698.1| Os04g0403400 [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|113564269|dbj|BAF14612.1| Os04g0403400 [Oryza sativa Japonica Group] [NCBI NR]
  • Os04g0403400 [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 1011 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEPPPENR HDDHHPSTSG GGLGYFHLRL LCPAAPLLLL LRSDRLYSLS LSRRRGPRLR  60
   61 LLASPRRRHG RRRRALLLST SGCALRLTHR SSSADAVRVN GRPLLRGGCP ADLAVGDEVS 120
  121 LLRRGTRYGF LVEKFVSCER PKLAAAEPCG EVLVLRAESL RKRLRAISES HDPLSFLRDS 180
  181 HCVENGSDDV RVKKAREEDV FLPLNLNAPI DPVAVEGLLR EDCNLGQGKL EHCTDSAIAK 240
  241 NETDELIQRS KGSCDGNTEQ KEYSNENTEQ QHNENEGCYS DGSTFFLNRL IGIGSDMRVE 300
  301 QRSGVTLPQL LHPMDSLERV FIATFTSDVS WFLDYCKVPQ NLPVTIACHN KERCWSASRE 360
  361 SRTAAPFGSY PNLLLVYPQF PEEIAFGKDR KKQGVACHHP KLLVLQRKDS MRVIVTSANL 420
  421 VPRQWHLITN TVWWQDFPCR TSTDYSALFS KVEESKSDFA TQLVSFIAFL INEVPSQSYW 480
  481 INEIAKYNFE GAAGYLIASV PGIYARNPHY LESNYCLSRK QILHTKSAHR MFLGSVQTSV 540
  541 VGLSHRFHIP SDAGSKLKAL SVLLSKCHVN MHGTTEVILK RNTNIPADAN AVSVLVADLD 600
  601 KFTEEDSVHL GFLPREVAKW VSPLSDLGFF TFSGFIYPRE ALEAAYGATN TKVQLLLYVS 660
  661 KGPEFSQISR LIQDEHFPLL CSLVASLKRS LGLWRLEEVL SHFKWPETLE TDFFYSASSI 720
  721 GTSINPQFIA SFASAAGKRC NQDLDSEESD PEWGCWTANH ELKKPSINLL FPTIDRVKNG 780
  781 ACGIQLSRHL LSLPERTWQR LRSTGIFRDA IPHPYERIGH PMHVKVAQRR FESRLGRHSF 840
  841 GWTYCGSHNF SPAAWGQQLP PPKANPTEAR AVSSGPRLHI CNYELGIILI IPPSAMSKQI 900
  901 SGRRHEINDI VLPFVVPPPQ YKLGDRPATS LAMREAMAEA RILQSNDLVL DLSQDTDEDI 960
  961 PDEDDEHVIE LSDCSPEEKE EEKIYAETLW EQVDSSQRPG WPVKLKSRCF G

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..202] deduced N/A No confident structure predictions are available.
    2 View Details [203..386] deduced N/A No confident structure predictions are available.
    3 View Details [387..551] deduced N/A No confident structure predictions are available.
    4 View Details [552..1011] PSI-BLAST 90.045757 human Tyrosyl DNA phosphodiesterase


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.62

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle