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Protein Overview: PRPF38A

General Information:
Name(s) found: PRPF38A [HGNC (HUGO)]
Description(s) found:
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  • gi|85397879|gb|AAI05007.1| PRP38 pre-mRNA processing factor 38 (yeast) domain containing A, isoform 2 [Homo sapiens] [NCBI NR]
  • gi|85397486|gb|AAI05005.1| PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Homo sapiens] [NCBI NR]
  • gi|74760086|sp|Q8NAV1.1|PR38A_HUMAN RecName: Full=Pre-mRNA-splicing factor 38A [NCBI NR]
  • gi|55960621|emb|CAI12289.1| PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Homo sapiens] [NCBI NR]
  • gi|24762236|ref|NP_116253.2| PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Homo sapiens] [NCBI NR]
  • gi|21750541|dbj|BAC03796.1| unnamed protein product [Homo sapiens] [NCBI NR]
  • gi|119627187|gb|EAX06782.1| PRP38 pre-mRNA processing factor 38 (yeast) domain containing A, isoform CRA_b [Homo sapiens] [NCBI NR]
  • PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [HGNC (HUGO)]
  • Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A PE=1 SV=1 [Swiss-Prot]
  • Hypothetical protein FLJ34719 [hmr_yeast5_DM3-1_pombe.fasta]
  • hypothetical protein FLJ14936 [HMR_022704.fasta]
  • hypothetical protein FLJ14936 [Homo sapiens]gi|21750541|dbj|BAC03796.1| unnamed protein product [Homo sapiens]gi|26449293|dbj|BAC41774.1| hypothetical protein [Macaca fascicularis] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=9606 CDNA FLJ34719 fis, clone MESAN2005689, weakly similar to SPLICING FACTOR, ARGININE/SERINE-RICH 2 [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • PRP38 pre-mRNA processing factor 38 (yeast) domain containing A isoform 2 [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • Tax_Id=9606 Hypothetical protein FLJ34719 [EBI-IPI_human_3.12_11-03-2005_con_reversed.fasta]
  • hypothetical protein FLJ14936 [Homo sapiens] [HumanGallus06162005.fasta]
  • Pre-mRNA-splicing factor 38A [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • PRP38 pre-mRNA processing factor 38 (yeast) domain containing A [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • unnamed protein product [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • PRP38 pre-mRNA processing factor 38 (yeast) domain containing A, isoform CRA_b [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • PRP38 pre-mRNA processing factor 38 (yeast) domain containing A, isoform 2 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 HYPOTHETICAL PROTEIN FLJ34719 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=PRPF38A Isoform 1 of Pre-mRNA-splicing factor 38A [human-ipi-250309-contam.fasta]
  • novel protein [Homo sapiens] [nr-271106-contam.fasta]
  • IPI:IPI00171390.2|SWISS-PROT:Q8NAV1-1|ENSEMBL:ENSP00000257181|REFSEQ:NP_116253|H-INV:HIT000016905|VEGA:OTTHUMP00000009912 Tax_Id=9606 Gene_Symbol=PRPF38A Isoform 1 of Pre-mRNA-splicing factor 38A [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=PRPF38A Isoform 1 of Pre-mRNA-splicing factor 38A ENSG00000134748 IPI00171390 IPI00386847 [drosphohumanreversed.fasta]
  • pre-mRNA-splicing factor 38A [Homo sapiens] [NCBI-RefSeq_Human_na_04-23-2010_reversed.fasta]
  • Q8NAV1;Q96JW1;Q9BVZ8; RecName: Full=Pre-mRNA-splicing factor 38A; [UniProt_Human_2010_06_06-01-2010_reversed.fasta]
  • Isoform 1 of Pre-mRNA-splicing factor 38A OS=Homo sapiens GN=PRPF38A [011711_HMR.fasta]
  • Pre-mRNA-splicing factor 38A n=15 Tax=Tetrapoda RepID=PR38A_HUMAN [UniProt_Xenopus_laevis_01-01-2011_reversed.fasta]
  • GeneSymbol=PRPF38A Synonyms=FLJ14936|MGC3320|Prp38|RP5-965L7.1 pre-mRNA-splicing factor 38A [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • Pre-mRNA-splicing factor 38A GN=PRPF38A [Doctor+uniprot-HUMAN-120911.fasta]
    • Organism: Homo sapiens
    Length: 312 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANRTVKDAH SIHGTNPQYL VEKIIRTRIY ESKYWKEECF GLTAELVVDK AMELRFVGGV  60
   61 YGGNIKPTPF LCLTLKMLQI QPEKDIIVEF IKNEDFKYVR MLGALYMRLT GTAIDCYKYL 120
  121 EPLYNDYRKI KSQNRNGEFE LMHVDEFIDE LLHSERVCDI ILPRLQKRYV LEEAEQLEPR 180
  181 VSALEEDMDD VESSEEEEEE DEKLERVPSP DHRRRSYRDL DKPRRSPTLR YRRSRSRSPR 240
  241 RRSRSPKRRS PSPRRERHRS KSPRRHRSRS RDRRHRSRSK SPGHHRSHRH RSHSKSPERS 300
  301 KKSHKKSRRG NE

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..181] Pfam 76.69897 No description for PF03371.6 was found. No confident structure predictions are available.
    2 View Details [182..312] MSA 3.086997 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle