YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|110740464, gi...

General Information:
Name(s) found: gi|238478403 [NCBI NR]
gi|145335250 [NCBI NR]
gi|110740464 [NCBI NR]
Description(s) found:
Found 8 descriptions.
SHOW ALL
  • gi|238478403|ref|NP_001154320.1| RNL (RNA LIGASE); 2',3'-cyclic-nucleotide 3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|145335250|ref|NP_172269.2| RNL (RNA LIGASE); 2',3'-cyclic-nucleotide 3'-phosphodiesterase/ RNA ligase (ATP)/ polynucleotide kinase [Arabidopsis thaliana] [NCBI NR]
  • gi|110740464|dbj|BAF02126.1| translation elongation factor EF-1 alpha [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 1104 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: tRNA splicing, via endonucleolytic cleavage and ligation [IDA][TAS]
    Molecular Function: polynucleotide kinase activity [IGI]
    2',3'-cyclic-nucleotide 3'-phosphodiesterase activity [IGI]
    RNA ligase (ATP) activity [IGI]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAPFESGDS SATVVAEAVN NQFGGLSLKE SNTNAPVLPS QTTSNHRVQN LVWKPKSYGT  60
   61 VSGSSSATEV GKTSAVSQIG SSGDTKVGLN LSKIFGGNLL EKFSVDKSTY CHAQIRATFY 120
  121 PKFENEKTDQ EIRTRMIEMV SKGLATLEVS LKHSGSLFMY AGHKGGAYAK NSFGNIYTAV 180
  181 GVFVLSRMFR EAWGTKAPKK EAEFNDFLEK NRMCISMELV TAVLGDHGQR PLDDYVVVTA 240
  241 VTELGNGKPQ FYSTSEIISF CRKWRLPTNH VWLFSTRKSV TSFFAAFDAL CEEGIATSVC 300
  301 RALDEVADIS VPASKDHVKV QGEILEGLVA RIVSSQSSRD MENVLRDHPP PPCDGANLDL 360
  361 GLSLREICAA HRSNEKQQMR ALLRSVGPSF CPSDVEWFGD ESHPKSADKS VITKFLQSQP 420
  421 ADYSTSKLQE MVRLMKEKRL PAAFKCYHNF HRAEDISPDN LFYKLVVHVH SDSGFRRYHK 480
  481 EMRHMPSLWP LYRGFFVDIN LFKSNKGRDL MALKSIDNAS ENDGRGEKDG LADDDANLMI 540
  541 KMKFLTYKLR TFLIRNGLSI LFKDGAAAYK TYYLRQMKIW GTSDGKQKEL CKMLDEWAAY 600
  601 IRRKCGNDQL SSSTYLSEAE PFLEQYAKRS PKNHILIGSA GNLVRTEDFL AIVDGDLDEE 660
  661 GDLVKKQGVT PATPEPAVKE AVQKDEGLIV FFPGIPGSAK SALCKELLNA PGGFGDDRPV 720
  721 HTLMGDLVKG KYWPKVADER RKKPQSIMLA DKNAPNEDVW RQIEDMCRRT RASAVPIVAD 780
  781 SEGTDTNPYS LDALAVFMFR VLQRVNHPGK LDKESSNAGY VLLMFYHLYE GKNRNEFESE 840
  841 LIERFGSLIK MPLLKSDRTP LPDPVKSVLE EGIDLFNLHS RRHGRLESTK GTYAAEWTKW 900
  901 EKQLRDTLVA NSEYLSSIQV PFESMVHQVR EELKTIAKGD YKPPSSEKRK HGSIVFAAIN 960
  961 LPATQVHSLL EKLAAANPTM RSFLEGKKKS IQEKLERSHV TLAHKRSHGV ATVASYSQHL1020
 1021 NREVPVELTE LIYNDKMAAL TAHVGSVDGE TVVSKNEWPH VTLWTAEGVT AKEANTLPQL1080
 1081 YLEGKASRLV IDPPVSISGP LEFF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] deduced N/A No confident structure predictions are available.
    2 View Details [126..233] MSA 1.007989 View MSA. No confident structure predictions are available.
    3 View Details [234..311] deduced N/A No confident structure predictions are available.
    4 View Details [312..439] MSA 1.006948 View MSA. No confident structure predictions are available.
    5 View Details [440..580] deduced N/A No confident structure predictions are available.
    6 View Details [581..672] deduced N/A No confident structure predictions are available.
    7 View Details [673..753] deduced N/A No confident structure predictions are available.
    8 View Details [754..869] deduced N/A No confident structure predictions are available.
    9 View Details [870..1104] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle