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Protein Overview: gi|88192891, gi|...

General Information:
Name(s) found: gi|9963797 [NCBI NR]
gi|88192892 [NCBI NR]
gi|88192891 [NCBI NR]
gi|7706326 [NCBI NR]
gi|6841570 [NCBI NR]
gi|62822095 [NCBI NR]
gi|4929689 [NCBI NR]
gi|189053227 [NCBI NR]
gi|15930037 [NCBI NR]
gi|15278118 [NCBI NR]
gi|12585536 [NCBI NR]
gi|119621172 [NCBI NR]
Description(s) found:
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  • gi|9963797|gb|AAG09698.1|AF184213_1 ht006 protein [Homo sapiens] [NCBI NR]
  • gi|88192892|pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal Protein P14 Bound To Region Of Sf3b155 [NCBI NR]
  • gi|88192891|pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal Protein P14 Bound To Region Of Sf3b155 [NCBI NR]
  • gi|7706326|ref|NP_057131.1| splicing factor 3B, 14 kDa subunit [Homo sapiens] [NCBI NR]
  • gi|6841570|gb|AAF29138.1|AF161523_1 HSPC175 [Homo sapiens] [NCBI NR]
  • gi|62822095|gb|AAY14664.1| unknown [Homo sapiens] [NCBI NR]
  • gi|4929689|gb|AAD34105.1|AF151868_1 CGI-110 protein [Homo sapiens] [NCBI NR]
  • gi|189053227|dbj|BAG34849.1| unnamed protein product [Homo sapiens] [NCBI NR]
  • gi|15930037|gb|AAH15463.1| Splicing factor 3B, 14 kDa subunit [Homo sapiens] [NCBI NR]
  • gi|15278118|gb|AAK94041.1|AF401310_1 pre-mRNA branch site protein p14 [Homo sapiens] [NCBI NR]
  • gi|12585536|sp|Q9Y3B4.1|PM14_HUMAN RecName: Full=Pre-mRNA branch site protein p14; AltName: Full=SF3B 14 kDa subunit [NCBI NR]
  • gi|119621172|gb|EAX00767.1| splicing factor 3B, 14 kDa subunit [Homo sapiens] [NCBI NR]
  • Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1 [Swiss-Prot]
  • Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 PE=1 SV=1 [Swiss-Prot]
  • Pre-mRNA branch site protein p14 [hmr_yeast5_DM3-1_pombe.fasta]
  • pre-mRNA branch site protein p14; CGI-110 protein; splicing factor 3B, 14 kDa subunit [HMR_022704.fasta]
  • PREDICTED: hypothetical protein XP_515324 [Pan troglodytes]gi|7706326|ref|NP_057131.1| splicing factor 3B, 14 kDa subunit [Homo sapiens]gi|15930037|gb|AAH15463.1| Splicing factor 3B, 14 kDa subunit [Homo sapiens]gi|50344788|ref|NP_001002067.1| zgc:8670 [nrdb_11152004_Chlamydomonas]
  • Pre-mRNA branch site protein p14 (SF3B 14 kDa subunit) [Yateslab_human_na_07-28-2006_reversed.fasta]
  • Tax_Id=9606 Pre-mRNA branch site protein p14 [EBI-IPI_human_3.17_05-09-2006_con_reversed.fasta]
  • (NM_016047) CGI-110 protein [Homo sapiens] [NCBI-RefSeq_human-mouse-rat_na_10-18-2006_con_reversed.fasta]
  • splicing factor 3B, 14 kDa subunit [Homo sapiens] [NCBI-RefSeq_Human_na_12_06_2006_con_reversed.fasta]
  • pre-mRNA branch site protein p14; CGI-110 protein; splicing factor 3B, 14 kDa subunit [Homo sapiens] [HumanGallus06162005.fasta]
  • Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal Protein P14 Bound To Region Of Sf3b155 [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal Protein P14 Bound To Region Of Sf3b155 [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • unnamed protein product [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Splicing factor 3B, 14 kDa subunit [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • unknown [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • pre-mRNA branch site protein p14 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • HSPC175 [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • ht006 protein [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • CGI-110 protein [Homo sapiens] [NCBI-RefSeq_human_na_08-16-2008_con_reversed.fasta]
  • Tax_Id=9606 PRE-MRNA BRANCH SITE PROTEIN P14 [Xentr4_EBI-IPI_human_mouse_rat_Xenopus_tropicalis_laevis_con_reversed.fasta]
  • RecName: Full=Pre-mRNA branch site protein p14; AltName: Full=SF3B 14 kDa subunit [NCBI-RefSeq_human_na_10-15-2008_con_reversed.fasta]
  • Tax_Id=9606 Gene_Symbol=SF3B14 Pre-mRNA branch site protein p14 [human-ipi-250309-contam.fasta]
  • IPI:IPI00032827.1|SWISS-PROT:Q9Y3B4|TREMBL:Q53TM1|ENSEMBL:ENSP00000233468|REFSEQ:NP_057131|H-INV:HIT000037124|VEGA:OTTHUMP00000155154 Tax_Id=9606 Gene_Symbol=SF3B14 Pre-mRNA branch site protein p14 [ipi.HUMAN.fasta.20090807]
  • [human_BMb_040710_contam.fasta]
  • Tax_Id=9606 Gene_Symbol=SF3B14 Pre-mRNA branch site protein p14 ENSG00000115128 IPI00032827 [drosphohumanreversed.fasta]
  • Q9Y3B4; RecName: Full=Pre-mRNA branch site protein p14; AltName: Full=SF3b 14 kDa subunit; [UniProt_Human_2010_06_06-01-2010_reversed.fasta]
  • Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 [011711_HMR.fasta]
  • Pre-mRNA branch site protein p14 n=21 Tax=Euteleostomi RepID=PM14_HUMAN [UniProt_Xenopus_laevis_01-01-2011_reversed.fasta]
  • GeneSymbol=SF3B14 Synonyms=HSPC175|Ht006|P14|SAP14|SF3B14a pre-mRNA branch site protein p14 [Homo sapiens] [NCBI-RefSeq_Human_Seno_07-12-2011_reversed.fasta]
  • Pre-mRNA branch site protein p14 GN=SF3B14 [Doctor+uniprot-HUMAN-120911.fasta]
    • Organism: Homo sapiens
    Length: 125 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMQAAKRAN IRLPPEVNRI LYIRNLPYKI TAEEMYDIFG KYGPIRQIRV GNTPETRGTA  60
   61 YVVYEDIFDA KNACDHLSGF NVCNRYLVVL YYNANRAFQK MDTKKKEEQL KLLKEKYGIN 120
  121 TDPPK

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..125] PSI-BLAST 28.154902 2.5 angstrom resolution structure of the spliceosomal protein p14 bound to region of SF3b155

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  4.19321059609759 bayes_pls_golite062009
  • mRNA binding
    		•  3.12182789118099 bayes_pls_golite062009
  • binding
    		•  2.59476451386603 bayes_pls_golite062009
  • nucleic acid binding
    		•  2.4424340402417 bayes_pls_golite062009
    		• 1.49638737900598 bayes_pls_golite062009
  • protein binding
    		•  1.0739686189111 bayes_pls_golite062009
  • single-stranded RNA binding
    		•  1.02921658232313 bayes_pls_golite062009
  • poly-pyrimidine tract binding
    		•  0.813292993207772 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle