YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: gi|4938296, gi|2...

General Information:
Name(s) found: gi|4938296 [NCBI NR]
gi|21396480 [NCBI NR]
Description(s) found:
Found 22 descriptions.
SHOW ALL
  • gi|4938296|emb|CAB43742.1| RNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog (mouse)) [Homo sapiens] [NCBI NR]
  • gi|21396480|ref|NP_031393.2| RNA binding protein (autoantigenic, hnRNP-associated with lethal yellow) short isoform [Homo sapiens] [NCBI NR]
    • Organism: Homo sapiens
    Length: 290 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLKLQASNV TNKNDPKSIN SRVFIGNLNT ALVKKSDVET IFSKYGRVAG CSVHKGYAFV  60
   61 QYSNERHARA AVLGENGRVL AGQTLDINMA GEPKPDRPKG LKRAASAIYR LFDYRGRLSP 120
  121 VPVPRAVPVK RPRVTVPLVR RVKTNVPVKL FARSTAVTTS SAKIKLKSSE LQAIKTELTQ 180
  181 IKSNIDALLS RLEQIAAEQK ANPDGKKKGD GGGAGGGGGG GGSGGGGSGG GGGGGSSRPP 240
  241 APQENTTSEA GLPQGEARTR DDGDEEGLLT HSEEELEHSQ DTDADDGALQ

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    The following runs contain data for this protein:

      BAIT COMMENTS PUBLICATION
    View Run gi|14317902, gi|... No Comments Cheeseman, I.M., et al. (2004)

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..95] PSI-BLAST 18.30103 Solution structure of RRM domain in RNA-binding protein NP_057951
    2 View Details [96..290] MSA 3.922997 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • RNA binding
    		•  2.96087565414382 bayes_pls_golite062009
  • binding
    		•  2.29041217255208 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.91189490017911 bayes_pls_golite062009
  • mRNA binding
    		•  1.52245536665132 bayes_pls_golite062009
  • protein binding
    		•  0.0101134374085809 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle