YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: YIR040C

General Information:
Name(s) found: YIR040C [SGD]
Description(s) found:
SHOW ONLY BEST
  • gi|731926|sp|P40584.1|YIW0_YEAST RecName: Full=Putative UPF0377 protein YIR040C [NCBI NR]
  • gi|600457|emb|CAA86999.1| unknown [Saccharomyces cerevisiae] [NCBI NR]
  • pir||S50345 hypothetical protein YIR040c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • Putative UPF0377 protein YIR040C OS=Saccharomyces cerevisiae GN=YIR040C PE=3 SV=1 [Swiss-Prot]
  • Strong similarity to subtelomeric encoded proteins [mips]
  • [DUBIOUS] Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data [SGD]
  • YIR040C, Chr IX from 433385-433717, reverse complement [yeast_orfs2]
  • Chr IX from 433385-433717, reverse complement [yeastorf3.fasta]
  • (P40584) Hypothetical 13.0 kDa protein in HYR1 3'region [4932.FASTACCERV.txt]
  • unknown [Saccharomyces cerevisiae]gi|731926|sp|P40584|YIW0_YEAST Hypothetical 13.0 kDa protein in HYR1 3'regiongi|1077750|pir||S50345 hypothetical protein YIR040c - yeast (Saccharomyces cerevisiae) [nrdb_11152004_Chlamydomonas]
  • YIR040C SGDID:S0001479, Chr IX from 433717-433385, reverse complement, Dubious ORF [yeastflysequest.fasta]
  • YIR040C SGDID:S000001479, Chr IX from 433717-433385, reverse complement, Dubious ORF, "Hypothetical protein" [yeast-contam.fasta]
  • YIR040C SGDID:S000001479, Chr IX from 433717-433385, reverse complement, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data" [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • unknown [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Putative UPF0377 family protein YIR040C [nr-271106-contam.fasta]
  • [S288C.fasta]
  • Putative UPF0377 protein YIR040C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YIR040C PE=5 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YIR040C SGDID:S000001479, Chr IX from 433721-433389, Genome Release 64-1-1, reverse complement, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on experimental and comparative sequence data" [yeast-030211-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 110 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTLFLNES YIFHRLRMWS IVLWHSCVFV CAECGNANYR VPRCLIKPFS VPVTFPFSVK  60
   61 KNIRILDLDP RTEAYCLSPY SVCSKRLPCK KYFYLLNSYN IKRVLGVVYC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..110] deduced N/A No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.35

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle