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Protein Overview: YCR013C

General Information:
Name(s) found: YCR013C [SGD]
Description(s) found:
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  • pir||S19423 probable membrane protein YCR013c - yeast (Saccharomyces cerevisiae) [NCBI NR]
  • gi|1907156|emb|CAA42330.1| hypothetical protein [Saccharomyces cerevisiae] [NCBI NR]
  • gi|140460|sp|P25614.1|YCQ3_YEAST RecName: Full=Putative uncharacterized protein YCR013C [NCBI NR]
  • Putative uncharacterized protein YCR013C OS=Saccharomyces cerevisiae GN=YCR013C PE=5 SV=1 [Swiss-Prot]
  • Questionable protein [mips]
  • [DUBIOUS] Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcription of both YCR013C and the overlapping essential gene PGK1 is reduced in a gcr1 null mutant [SGD]
  • YCR013C, Chr III from 138396-139043, reverse complement [yeast_orfs2]
  • Chr III from 138396-139043, reverse complement [yeastorf3.fasta]
  • (P25614) Very hypothetical 22.8 kDa protein in PGK1-POL4 intergenic region [4932.FASTACCERV.txt]
  • hypothetical protein [Saccharomyces cerevisiae]gi|83203|pir||S19423 probable membrane protein YCR013c - yeast (Saccharomyces cerevisiae)gi|140460|sp|P25614|YCQ3_YEAST VERY HYPOTHETICAL 22.8 KD PROTEIN IN PGK1-POL4 INTERGENIC REGION [nrdb_11152004_Chlamydomonas]
  • YCR013C SGDID:S0000606, Chr III from 139046-138399, reverse complement, Dubious ORF [yeastflysequest.fasta]
  • YCR013C SGDID:S000000606, Chr III from 139047-138400, reverse complement, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; extensively overlaps essential PGK1 gene encodi [yeast-contam.fasta]
  • YCR013C SGDID:S000000606, Chr III from 139047-138400, reverse complement, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcription of both YCR013C and the overlappi [SGD_S-cerevisiae_na_08-19-2008_con_reversed.fasta]
  • hypothetical protein [Saccharomyces cerevisiae] [nr-271106-contam.fasta]
  • Very hypothetical protein YCR013C [nr-271106-contam.fasta]
  • YCR013C SGDID:S000000606, Chr III from 139047-138400, reverse complement, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcription of both YCR013C and the overlapping essential gene PGK1 is reduced in a gcr1 null mutant" [yeast-bovrabprots.fasta]
  • YCR013C SGDID:S000000606, Chr III from 139047-138400, reverse complement, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; extensively overlaps essential PGK1 gene encoding 3-phosphoglycerate kinase" [yeast-contam_custom.fasta]
  • [chemostatdb.fasta]
  • Putative uncharacterized protein YCR013C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YCR013C PE=5 SV=1 [UniProt_S_cerevisiae_20120516_05-16-2012_reversed.fasta]
  • YCR013C SGDID:S000000606, Chr III from 139049-138402, Genome Release 64-1-1, reverse complement, Dubious ORF, "Dubious open reading frame unlikely to encode a protein, based on available experimental and comparative sequence data; transcription of both YCR013C and the overlapping essential gene PGK1 is reduced in a gcr1 null mutant" [yeast-030211-contam.fasta]
    • Organism: Saccharomyces cerevisiae
    Length: 215 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKEKRKKLI YRFQFNSIYF FSDKKATPGN SLPSNNSKEA PPPVETWEIL SVTPYFLATV  60
   61 AVSPPPMMTV LPAAELLTTS SNKALVPAAN FSNSKTPGGP FQTMVLAFAT VAANNFLDSG 120
  121 PLSNPCQPAG IPSLSVTVLV LASAEKASAM MKSTGKTTST PLALAFSINF GTISAPALSK 180
  181 MESPISVFSK TFLKVKAIPP PMMIESTLSN KLSIN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

      BAIT PREY HITS PUBLICATION
    View Screen SNF4 YCR013C 1 Unpublished Fields Lab Data
    View Screen CTF13 YCR013C 1 Unpublished Fields Lab Data
    View Screen CDC4 YCR013C 1 Unpublished Fields Lab Data

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..215] MSA 1.002959 View MSA. No confident structure predictions are available.


    Reference: Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.39

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle