YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

Protein Overview: NRPE1_ARATH

General Information:
Name(s) found: NRPE1_ARATH [Swiss-Prot]
Description(s) found:
Found 11 descriptions.
SHOW ALL
  • DNA-directed RNA polymerase V subunit 1 OS=Arabidopsis thaliana GN=NRPE1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 1976 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IDA][ISS]
    nuclear body [IDA]
    DNA-directed RNA polymerase IV complex [IPI]
    RNA polymerase complex [IPI]
    DNA-directed RNA polymerase V complex [IPI]
    nucleolus [IDA]
    Biological Process: DNA methylation [IMP]
    transcription [ISS]
    posttranscriptional gene silencing by RNA [IMP]
    production of siRNA involved in RNA interference [IGI][IMP]
    Molecular Function: DNA binding [ISS]
    DNA-directed RNA polymerase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEESTSEIL DGEIVGITFA LASHHEICIQ SISESAINHP SQLTNAFLGL PLEFGKCESC  60
   61 GATEPDKCEG HFGYIQLPVP IYHPAHVNEL KQMLSLLCLK CLKIKKAKGT SGGLADRLLG 120
  121 VCCEEASQIS IKDRASDGAS YLELKLPSRS RLQPGCWNFL ERYGYRYGSD YTRPLLAREV 180
  181 KEILRRIPEE SRKKLTAKGH IPQEGYILEY LPVPPNCLSV PEASDGFSTM SVDPSRIELK 240
  241 DVLKKVIAIK SSRSGETNFE SHKAEASEMF RVVDTYLQVR GTAKAARNID MRYGVSKISD 300
  301 SSSSKAWTEK MRTLFIRKGS GFSSRSVITG DAYRHVNEVG IPIEIAQRIT FEERVSVHNR 360
  361 GYLQKLVDDK LCLSYTQGST TYSLRDGSKG HTELKPGQVV HRRVMDGDVV FINRPPTTHK 420
  421 HSLQALRVYV HEDNTVKINP LMCSPLSADF DGDCVHLFYP QSLSAKAEVM ELFSVEKQLL 480
  481 SSHTGQLILQ MGSDSLLSLR VMLERVFLDK ATAQQLAMYG SLSLPPPALR KSSKSGPAWT 540
  541 VFQILQLAFP ERLSCKGDRF LVDGSDLLKF DFGVDAMGSI INEIVTSIFL EKGPKETLGF 600
  601 FDSLQPLLME SLFAEGFSLS LEDLSMSRAD MDVIHNLIIR EISPMVSRLR LSYRDELQLE 660
  661 NSIHKVKEVA ANFMLKSYSI RNLIDIKSNS AITKLVQQTG FLGLQLSDKK KFYTKTLVED 720
  721 MAIFCKRKYG RISSSGDFGI VKGCFFHGLD PYEEMAHSIA AREVIVRSSR GLAEPGTLFK 780
  781 NLMAVLRDIV ITNDGTVRNT CSNSVIQFKY GVDSERGHQG LFEAGEPVGV LAATAMSNPA 840
  841 YKAVLDSSPN SNSSWELMKE VLLCKVNFQN TTNDRRVILY LNECHCGKRF CQENAACTVR 900
  901 NKLNKVSLKD TAVEFLVEYR KQPTISEIFG IDSCLHGHIH LNKTLLQDWN ISMQDIHQKC 960
  961 EDVINSLGQK KKKKATDDFK RTSLSVSECC SFRDPCGSKG SDMPCLTFSY NATDPDLERT1020
 1021 LDVLCNTVYP VLLEIVIKGD SRICSANIIW NSSDMTTWIR NRHASRRGEW VLDVTVEKSA1080
 1081 VKQSGDAWRV VIDSCLSVLH LIDTKRSIPY SVKQVQELLG LSCAFEQAVQ RLSASVRMVS1140
 1141 KGVLKEHIIL LANNMTCSGT MLGFNSGGYK ALTRSLNIKA PFTEATLIAP RKCFEKAAEK1200
 1201 CHTDSLSTVV GSCSWGKRVD VGTGSQFELL WNQKETGLDD KEETDVYSFL QMVISTTNAD1260
 1261 AFVSSPGFDV TEEEMAEWAE SPERDSALGE PKFEDSADFQ NLHDEGKPSG ANWEKSSSWD1320
 1321 NGCSGGSEWG VSKSTGGEAN PESNWEKTTN VEKEDAWSSW NTRKDAQESS KSDSGGAWGI1380
 1381 KTKDADADTT PNWETSPAPK DSIVPENNEP TSDVWGHKSV SDKSWDKKNW GTESAPAAWG1440
 1441 STDAAVWGSS DKKNSETESD AAAWGSRDKN NSDVGSGAGV LGPWNKKSSE TESNGATWGS1500
 1501 SDKTKSGAAA WNSWDKKNIE TDSEPAAWGS QGKKNSETES GPAAWGAWDK KKSETEPGPA1560
 1561 GWGMGDKKNS ETELGPAAMG NWDKKKSDTK SGPAAWGSTD AAAWGSSDKN NSETESDAAA1620
 1621 WGSRNKKTSE IESGAGAWGS WGQPSPTAED KDTNEDDRNP WVSLKETKSR EKDDKERSQW1680
 1681 GNPAKKFPSS GGWSNGGGAD WKGNRNHTPR PPRSEDNLAP MFTATRQRLD SFTSEEQELL1740
 1741 SDVEPVMRTL RKIMHPSAYP DGDPISDDDK TFVLEKILNF HPQKETKLGS GVDFITVDKH1800
 1801 TIFSDSRCFF VVSTDGAKQD FSYRKSLNNY LMKKYPDRAE EFIDKYFTKP RPSGNRDRNN1860
 1861 QDATPPGEEQ SQPPNQSIGN GGDDFQTQTQ SQSPSQTRAQ SPSQAQAQSP SQTQSQSQSQ1920
 1921 SQSQSQSQSQ SQSQSQSQSQ SQSQSQSPSQ TQTQSPSQTQ AQAQSPSSQS PSQTQT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..1495] PSI-BLAST 1000.0 RBP1
    2 View Details [1496..1976] PSI-BLAST 59.69897 No description for 1y0fB was found.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle