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Protein Overview: MER3_ARATH

General Information:
Name(s) found: MER3_ARATH [Swiss-Prot]
Description(s) found:
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  • gi|62001777|gb|AAX58606.1| ROCK-N-ROLLERS [Arabidopsis thaliana] [NCBI NR]
  • gi|60172796|gb|AAX14498.1| meiotic recombination protein MER3 [Arabidopsis thaliana] [NCBI NR]
  • gi|145339009|ref|NP_189410.2| RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase/ DNA helicase [Arabidopsis thaliana] [NCBI NR]
  • DExH-box ATP-dependent RNA helicase DExH17 OS=Arabidopsis thaliana GN=MER3 PE=2 SV=1 [Swiss-Prot]
  • | Symbols: MER3, RCK | RCK (ROCK-N-ROLLERS); ATP binding / ATP-dependent helicase | chr3:10275189-10281450 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • meiotic recombination protein MER3 [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • ROCK-N-ROLLERS [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: RCK, MER3 | ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Meiotic recombination protein MER3 OS=Arabidopsis thaliana GN=MER3 PE=2 SV=1 [ARATH-contam.fasta]
    • Organism: Arabidopsis thaliana
    Length: 1133 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: chiasma assembly [IMP]
    reciprocal meiotic recombination [IMP]
    Molecular Function: ATP binding [ISS]
    DNA helicase activity [ISS]
    ATP-dependent helicase activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTHTLKSVS DLPGNFRSAF SFRYFNSLQS ECFPLCFHSD INMIISAPTG SGKTVLFELC  60
   61 ILRLFSKSIS KEGSFLHAKG ALKTVYISPS KALVQEKLRD WNQKFNSWGI SCLELTGDNE 120
  121 TYSTKNIQDA DIILTTPEKF DAVSRYRVTS GGLGFFSDIA LVLIDEVHLL NDPRGAALEA 180
  181 IVSRLKILSS NHELRSSTLA SVRLLAVSAT IPNIEDLAEW LKVPTAGIKR FGEEMRPVKL 240
  241 TTKVFGYAAA KNDFLFEKRL QNYIYDILMQ YSKGKSALVF CSTRKGAQEA AQKLAQTAMT 300
  301 YGYSNPFIKS REQLERLREA SPMCSDKQMQ SYILQGVGYH NGGLCQKDRS LVEGLFLNGD 360
  361 IQVICTTNTL AHGINLPAHT VVIKSTQHFN KEKGHYMEYD RSTLLQMSGR AGRPPFDDTG 420
  421 MVIIMTRRET VHLYENLLNG CEVVESQLLP CLIEHLTAEI VQLTISDITR AIEWMKCSYL 480
  481 YVRMKKNPEN YAIKKGIPKD RVEKHLQELC LQKINELSQY QMIWTDTDGF VLKPEEPGRL 540
  541 MTKYYLKFET MKYIINTPTS YSLDEALHIV CHAEEISWIQ LRRNEKKTLN DVNADKEGRL 600
  601 RFHINDNKGK RKKRIQTREE KLFVLANDWL TGDPSVHDLS MTQDANSICS NGSRIARCMK 660
  661 EYFIYKKNYK GTLSSTLLAK SLYQKLWDDS PYLLKQLPGI GMVTAKALHS MGVRSFEALA 720
  721 EADPRRIEIV TGRKYPFGNT IKESLSSLPP KVEIKVEEVD CQKQGISKLA VTLSRVSQPL 780
  781 QSTKRHYADL IVGSEEENLI HFHEKIRMED FSSPYSVTVL LERPHQQTKV TVKADLIFEE 840
  841 YIGIDLHETL LLKKANNNKV NYKSENRMPQ YYPPMASACI ADDDNPVTSG PSNRKDKKDD 900
  901 MPSFKLIDDD SEEEKEPYVT MEEDDCVIIN EHTVFDHIRE KAKCFPSLNP LNPTSSPASG 960
  961 KSILKRKSLV ENNSPELDPL FQYDSVFDLP TNTKDIKQSA QQITSPGYAS FAEKTETERP1020
 1021 FSDETIFNYI RKRSKNSPAL ATSKIENPIT ISSQEGRNAE ISPYRTYGLL VSPATKIPRI1080
 1081 TSDAPSEILS FDISMVKRSD TSLEQTKGFC STLAGKSNVS DSFLGFKSIF SFL

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..749] PSI-BLAST 82.69897 No description for 2va8A was found.
    2 View Details [750..857] PSI-BLAST 44.154902 No description for 2q0zX was found.
    3 View Details [858..1133] MSA 1.125955 View MSA. No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle