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Protein Overview: POB1_SCHPO

General Information:
Name(s) found: POB1_SCHPO [Swiss-Prot]
Description(s) found:
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  • gi|19113620|ref|NP_596828.1| hypothetical protein SPBC1289.04c [Schizosaccharomyces pombe 972h-] [NCBI NR]
  • Protein pob1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pob1 PE=1 SV=1 [Swiss-Prot]
    • Organism: Schizosaccharomyces pombe 972h-
    Length: 871 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQRFVIAL HSFPGKSSDE LPLVEGRKYL LIKMDEEFGD GWWEGEDEQG NRGIFPASHV  60
   61 ELISDERSDS SDSRRGKEDF SISTAEVTRS SLSSSRSTSS RSDKDSEKLY SNNSLSSSHS 120
  121 SILNGPLDSL SKPSVPSNFN SMFPSSKQEG PSPLLDNQPS SDLSNFNTID ADYNNASAST 180
  181 SAPATSASLK KVLSAEDSVR ETITDIETAL QNMSTSASRT PNDSSPLPYI ENRPASSLAV 240
  241 SEKIQNVPNW STEEVVEWLM NAGLGSVAPN FAENEITGEI LLGLDSNVLK ELNITSFGKR 300
  301 FEVLRKIQQL KDSYEQSLYE EYPQFAEPIS VSQSSDSSSS IPKKSNDEAG GSPSKSSPTR 360
  361 PGFNDYVNRP TSVMPSLSNM IVSPDLDSSP STDWNQYVIP PLATPSSRNS KSTQSAVPEN 420
  421 VSRFDSNEPS ATSPILKRSS PTDSISQNSG LPSRLTEPIS SPSTSSIDVD KEGTSFPGLP 480
  481 YHSSKGNLYA PQPSSNVPTK FTGGASESSS VPPRPIPSAM KGKAPASAIS IEALEELDPP 540
  541 KITTIDGESP SSISSRLPSS NLEQGSSSSV TKSPESMPDP SAKASSPVTS KGVSINEKSA 600
  601 VNNYATPLSK PQPKDTKGSK LGNTFVAPSP AASLPASPPV GTELKTRPTL RSVASSPLNK 660
  661 EPIGKRKSKR DIFGRQKVLP TGISEGLSNI PAKEAIKTAD CHGWMRKRSD RYGVWKSRYF 720
  721 VLKGTRLSYY HSLNDASEKG LIDMTSHRVT KTDDIVLSGG KTAIKLIPPA PGAAKAAVMF 780
  781 TPPKVHYFTC ENNEELHRWS SAFLKATVER DMSVPVLTTS RMPTISLSKA KELRTRPPSL 840
  841 LIDDENEANL TSSIGLKKNA KQKNKKSSKQ K

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..102] PSI-BLAST 9.30103 No description for 2eyzA was found.
    2 View Details [103..172] deduced N/A No confident structure predictions are available.
    3 View Details [173..334] FFAS03 2.48 RNA recognition by the Vts1 SAM domain
    4 View Details [335..426] deduced N/A No confident structure predictions are available.
    5 View Details [427..602] MSA 5.251991 View MSA. No confident structure predictions are available.
    6 View Details [603..700] deduced N/A No confident structure predictions are available.
    7 View Details [701..871] PSI-BLAST 36.69897 Grp1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.
    7
    Term Confidence Notes
  • binding
    		•  2.45243621998765 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  2.36862097678996 bayes_pls_golite062009
  • actin binding
    		•  2.33076715684475 bayes_pls_golite062009
  • protein binding
    		•  2.02185635612105 bayes_pls_golite062009
  • actin filament binding
    		•  1.07760654703512 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.83

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle