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Protein Overview: gi|77550353, gi|...

General Information:
Name(s) found: gi|77550353 [NCBI NR]
gi|62733717 [NCBI NR]
Description(s) found:
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  • gi|77550353|gb|ABA93150.1| retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • gi|62733717|gb|AAX95827.1| retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] [NCBI NR]
  • retrotransposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] [nr-271106-contam.fasta]
    • Organism: Oryza sativa Japonica Group
    Length: 925 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLRKGKQD GHAQRQHLHL RRDMTTSSRD AYEVHDYNFA QVACKLPVYD GKYDSAAYIN  60
   61 WELAVEKQFD EYDFSNAQMI KAASNKCTGS ASFWWHTVGN KLETWDECKI LMRKRFVFSY 120
  121 YRRALLEKFE HLKQGDKTVR EYFHDFKICI TYSGLQESNE NTMTRFFRGL NSNIQAGLVN 180
  181 VTYNHIGQLF MLACNVEHKI LENPTEQQAM RVPPIADVLQ EVQNNPQNEK NDMFEMSLPS 240
  241 LANEEKADAP TLSEEGIKGK LNGAEITQGI GLICTGKINN PRRVYQDTWN SLPMGDEAAQ 300
  301 ALELMDRMIK LKEQGLQGEQ ITRHFIKSRL APIKERSRTA FEFDGKHDPN REDPDSLDFK 360
  361 VMKERMYKIF SNAIVVSYSH LLPVVPYNAF NPPPPEFALM KSDPPIAQRR SPRRQPGQGS 420
  421 GGPKIRSETQ PNTSNPAGQS DSRKRKLLLS DDEGDDAGKL GDKGATGKLP KQANPKKKTS 480
  481 SRPMPKIRKS SRKPSDIDPS GKDSDPINME TGSSKETGPT AKDHPSDNQP ATDNVEPSNE 540
  541 PPTGSQSAEA GIGINQESPT GNQSDTGPSQ EIPEVEAQAD SPPGKDASTD PGSRSPIKAQ 600
  601 EPTCPRPEII TGLMIGDEEE ILLIRAAEDS RPPILVKWWD DDMQPQGIVI NMQKEDEEVC 660
  661 LLKKALSQAT RIVNRIHLRN EAKTATLDKL VPHLGTLEAT RDQLHEAKEL ARKTEHDLRD 720
  721 RIAELQESNF ELSGSSKGNI VQAARISQLE KQIQTLENDK AELARQRDSA LKDVEDRKIK 780
  781 SQAQFDVLVG KIKRLEGARD EVANATTALV QAMFFNNNGP STFDASEIFD KLTVAPDTYF 840
  841 KNINEAGSMG ASLALAMTKS LSPKIDIDAI DGFAEGTSEE AALDLINDAQ KATDKIAVDV 900
  901 VERFQDTDLR PTGPDNSDNE KTDTD

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..219] Pfam 17.075721 No description for PF03732.9 was found. No confident structure predictions are available.
    2 View Details [220..443] deduced N/A No confident structure predictions are available.
    3 View Details [444..545] deduced N/A No confident structure predictions are available.
    4 View Details [546..602] deduced N/A No confident structure predictions are available.
    5 View Details [603..685] deduced N/A No confident structure predictions are available.
    6 View Details [686..925] PSI-BLAST 3.154902 Tropomyosin


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle