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Protein Overview: gi|123981016, gi...

General Information:
Name(s) found: gi|60823189 [NCBI NR]
gi|208967078 [NCBI NR]
gi|157928942 [NCBI NR]
gi|123995821 [NCBI NR]
gi|123981016 [NCBI NR]
Description(s) found:
Found 6 descriptions.
SHOW ALL
  • gi|60823189|gb|AAX36635.1| polymerase II polypeptide C [synthetic construct] [NCBI NR]
  • gi|208967078|dbj|BAG73553.1| polymerase (RNA) II (DNA directed) polypeptide C [synthetic construct] [NCBI NR]
  • gi|157928942|gb|ABW03756.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic construct] [NCBI NR]
  • gi|123995821|gb|ABM85512.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic construct] [NCBI NR]
  • gi|123981016|gb|ABM82337.1| polymerase (RNA) II (DNA directed) polypeptide C, 33kDa [synthetic construct] [NCBI NR]
    • Organism: synthetic construct
    Length: 275 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYANQPTVR ITELTDENVK FIIENTDLAV ANSIRRVFIA EVPIIAIDWV QIDANSSVLH  60
   61 DEFIAHRLGL IPLISDDIVD KLQYSRDCTC EEFCPECSVE FTLDVRCNED QTRHVTSRDL 120
  121 ISNSPRVIPV TSRNRDNDPN DYVEQDDILI VKLRKGQELR LRAYAKKGFG KEHAKWNPTA 180
  181 GVAFEYDPDN ALRHTVYPKP EEWPKSEYSE LDEDESQAPY DPNGKPERFY YNVESCGSLR 240
  241 PETIVLSALS GLKKKLSDLQ TQLSHEIQSD VLTIN

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..275] PSI-BLAST 63.522879 RPB3

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • DNA-directed RNA polymerase activity
    		•  8.95763217796707 bayes_pls_golite062009
  • RNA polymerase activity
    		•  8.95763217796707 bayes_pls_golite062009
  • nucleotidyltransferase activity
    		•  6.40098308297479 bayes_pls_golite062009
  • transferase activity, transferring phosphorus-containing groups
    		•  4.33401073482737 bayes_pls_golite062009
  • transferase activity
    		•  3.84777794959854 bayes_pls_golite062009
  • DNA binding
    		•  1.9558633290744 bayes_pls_golite062009
  • nucleic acid binding
    		•  1.91068858292286 bayes_pls_golite062009
  • binding
    		•  1.8068389543514 bayes_pls_golite062009
  • catalytic activity
    		•  0.902495165806215 bayes_pls_golite062009
  • protein binding
    		•  0.505707524948553 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle