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Protein Overview: RRF_VIBC3

General Information:
Name(s) found: RRF_VIBC3 [Swiss-Prot]
Description(s) found:
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  • gi|75827546|ref|ZP_00756981.1| COG0233: Ribosome recycling factor [Vibrio cholerae O395] [NCBI NR]
  • gi|227118703|ref|YP_002820599.1| ribosome recycling factor [Vibrio cholerae O395] [NCBI NR]
  • gi|227014153|gb|ACP10363.1| ribosome recycling factor [Vibrio cholerae O395] [NCBI NR]
  • gi|172047609|sp|A5F618.1|RRF_VIBC3 RecName: Full=Ribosome-recycling factor; Short=RRF; AltName: Full=Ribosome-releasing factor [NCBI NR]
  • gi|147673161|ref|YP_001217772.1| ribosome recycling factor [Vibrio cholerae O395] [NCBI NR]
  • gi|146315044|gb|ABQ19583.1| ribosome recycling factor [Vibrio cholerae O395] [NCBI NR]
  • Ribosome-recycling factor OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) GN=frr PE=3 SV=1 [Swiss-Prot]
  • COG0233: Ribosome recycling factor [Vibrio cholerae O395] [nr-271106-contam.fasta]
    • Organism: Vibrio cholerae O395
    Length: 185 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MINEIKKDAQ ERMEKSVEAL KNGLSKIRTG RAHPSLLTGI SVDYYGAPTP LNQVANVIAE  60
   61 DARTLAITVF DRELTQKVEK AILMSDLGLN PMSAGTIIRV PLPPLTEERR RDLVKIVRGE 120
  121 AEGGRVAVRN IRRDANNDLK ALLKDKEISE DDERRAQEEI QKLTDAAVKK IDDVLAAKEK 180
  181 ELMEV

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..185] PSI-BLAST 66.522879 Ribosome recycling factor, RRF

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • translation regulator activity
    		•  4.3587179630028 bayes_pls_golite062009
  • translation factor activity, nucleic acid binding
    		•  4.16037247039451 bayes_pls_golite062009
  • nucleic acid binding
    		•  3.79085926340206 bayes_pls_golite062009
  • binding
    		•  2.89152455528061 bayes_pls_golite062009
  • translation termination factor activity
    		•  2.10810503428749 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle