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Protein Overview: MED13_DICDI

General Information:
Name(s) found: MED13_DICDI [Swiss-Prot]
Description(s) found:
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  • gi|74854900|sp|Q54S20.1|MED13_DICDI RecName: Full=Mediator of RNA polymerase II transcription subunit 13; AltName: Full=Mediator complex subunit 13; AltName: Full=Aggregation minus B protein [NCBI NR]
  • gi|60468037|gb|EAL66047.1| unknown [Dictyostelium discoideum] [NCBI NR]
  • Mediator of RNA polymerase II transcription subunit 13 OS=Dictyostelium discoideum GN=amiB PE=2 SV=1 [Swiss-Prot]
    • Organism: Dictyostelium discoideum
    Length: 2678 amino acids

    Gene Ontology:
    Cellular Component: mediator complex [ISS]
    Biological Process: chemotaxis [IMP]
    aggregation involved in sorocarp development [IMP]
    cellular component movement [IGI][IMP]
    regulation of gene expression [IMP]
    transcription initiation from RNA polymerase II promoter [ISS]
    Molecular Function: RNA polymerase II transcription mediator activity [ISS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGTKVPSYN NKQQSGSNAG GNVNNNNNGP NINNPNNPNN TNSLPTTSGY NSSRFSVPNL  60
   61 DTDNFMTNII SMGVNKVGWA LYRSNSNNNN NNINNNSSSS SSSNTSNNIN SNTLVNDPIL 120
  121 LAYLKTIELG VPCLWRKTRS KKPINNSSNN SNITSSTSTD SSLKNRLKNS PSETTPPNTT 180
  181 NNNSNNVTKD SPPNATNKMS TSPKSLSPTI SNNNNNTTAA ATTTTTTTNN SSNSPTSPTN 240
  241 NNNNNNNNNS PSSHNVVNSP PSTSSRSPPT VASVTSNTST IQPISPIINR QTSSHNYQQP 300
  301 QQPYYNHQPL QPIQEYITTY ELWVFNISNT SLLDFSHLNN VESGIVNLDN IGCNNSVIVQ 360
  361 YLFKSLYNLV EYNMVSNDFI KIGNSFIKSS HILQKQKQSR NDYNNSIISG SVGSKKRLFE 420
  421 DFTNLYIEDD CLLSCSFSFF IYNKSIHLHF NVDKKRLKPL QELMKSEYIN SPLFTSPNAF 480
  481 IAFFNNNNKN NINNNSNNII NNNNNSNINN NINNNNNQQQ QQQQQQQQQQ QQQQQQQQQQ 540
  541 QQQQQQQQQQ QQQQQQTINN NSNNISSNND NNNTPSQMVP SIDGHDSSSS SSTPSQVTMQ 600
  601 TTPTQEFSNN NNNNISINTT TVPITATTAT ATNKITTAAT TTTTINNNNN KIQTESFGST 660
  661 RNKKLNDEEE INFSLSSQQW KQLFNIGLAN KAIIPKQQTP QQQEQQQIIG TIFKKNQLEV 720
  721 PKSIKTIITR GNSLPLINTF FPIELLFKFF PPISDISQYT YHEKLKEFGL EIFDKSPYAL 780
  781 LEKGLNLFIN NNNINIENNN NTSNEINNTG TQIPTKYKYV DFWSLPLFHS KESLIYGNDH 840
  841 FNATYCVKAV PSPSSPLTQH PSSPHSPFNN VNSPKSPQHP PSPKTPMISD DDQSLTANNE 900
  901 KKRHGKSQKK GRSSKRKKDD NSNNNNNNNT TTTSTITATT TTTTPTAATT GNDNFLAPQS 960
  961 KPPPSNIQET SQPQSLTTVQ PQPPPQQQQQ QQQQQQQQQQ QQQQQQQQQQ QQQQQQQQQQ1020
 1021 QQQQVVSSFS GQGLNSSMDL FGSDAFDTFK NKEDDLMHLS DTDIDLDLWT SHYVPPNQPT1080
 1081 QNGSQKNNQR PLPVEDPFQV FQVPNKPATT TTTTTTTTTP TPNPTTTTTQ PQTQPQQQSQ1140
 1141 QQQQPQQTNP ILPTNSNLIT NQKPQQYQPP LQDPFQSIDS QQPKSIQSPT LTNQPIGMVS1200
 1201 PTLTNQPLQQ YQPPPPPTQQ PQQAHLKPPP PKQPSAKKNS KDGINSDENK PFLDGQFLCP1260
 1261 VPYKAPSLSQ NQLPILHLPH NTEQSPSNDD LSNPNHLHHG TPTSAISGVG GSSSSSGNNM1320
 1321 IGSGGIVGSG GGNTNVSGSG GGMVSDPSKL TYSSEHHDPH HHHHHHHHHH PQNSQNLRNS1380
 1381 YGNSNGVGGS QDESIDGLTT VYRNLTLSRP LGDNKNKNNA PYYCAPSYKP LDEHSLPHQL1440
 1441 KFEYSYTPLV KPQNQLNQTK YSPFSNSHHN HHHNTTTNNN NNHNNNNNNN HPNNHHQNNN1500
 1501 HHHLNITSSL FQPSNIQNVN SLPNIGSQKI MSISPPITPP MKGGHMIGTD INKNNNKKNN1560
 1561 DEDENLEILS TIKQKDVNGL DSNLSSSALL SFFDQAINIK TTPPRSPVLS GYSGGGSNMN1620
 1621 NGINGNSGFI GNGNSGFNTI SSYQQNNISI EESLDLAFTI QQMTITNYDS TFGFSIDNSP1680
 1681 LIKQSIDYYL ENWLKIYTET GKVFNHHSLQ FLTEESISDA LDTVIDPLTT NTILETTVKT1740
 1741 LFTFSNEIFK KIFPLSSFPL SIKEFCHLPS ITLNNINNNI DLLNSQTYQN TNNSSSGGGI1800
 1801 ESQQYFSGSS GLNNSNDRNS MIPMDNSDDT SDLMSMDDHN SKNLITGTSL ISTTASGAGA1860
 1861 AITTNLINQN YEEFEWLPIP KIIVGYKEDW LEVPISTIKF WDKAQLEPYS PKKNITYFVL1920
 1921 CPDTTAMRMH VPAFFSDLSC IYETNHLGNH VTQQQSQVQQ AAAAAVAASQ PTQQSSQHQS1980
 1981 QQQQQQAAQQ AAAAAAAAAA AQKNSSPFYN GIYYIPSAAN TEFNPQTFIN SYLLTCIQFG2040
 2041 DYLKELSTKY SENNCMVLYI VNPFSDLSQI SLSNQNQNQN QNSNSNESQQ QQQQQSNNKQ2100
 2101 KQTQTNEDIN HIRNSYLFMS SCFQTIVRDI TCNQSLSITI QTIPIEQILF DDHPSIPVSK2160
 2161 ELAFSVFNKC RRISTISPMN FSINMNNINN MIGNNNSNSN NSSGWYYQLF NKIYEPLFIL2220
 2221 SNESSSSSSS TISTSTSAST STSTSNTTTK NQQQQSQSQQ SQQQSQQPKQ LSTPTTPTTN2280
 2281 SVSNSPSLQP QPLQTPNQLQ PHQQEQKQQQ QIPIIHFSYM LSDDNKWISC TIVDEQGELL2340
 2341 ENKLIPLAYS QIIGDYIWKD SFQNAWFFLT EIIGLSLSGQ PCQVVIGKFG IISMQEYNDW2400
 2401 KTTIIHFEDN LEVIKQHQQQ SQSQNYSSTI DQIYKIENVI FLNLTLNNNI KSFLTEYLND2460
 2461 SKLSNSNNIK SVSPLSGQSF AIYPESPIMY TYNFPMNDNN DDYNSILNNN NNNILPPLST2520
 2521 SFVITSPSNL SGSVLTPTTT NSNVINNNQS KKEWPFTYML SIVGIQSLQH QQQQQQQQQQ2580
 2581 QQQQQHPNII NHQELIRSIT RSYHRLSYLN ISPRYPDRLS ILPIHFSISK RMSRTVCLIS2640
 2641 PLNPIPPPIL FNRCPKLTPN SKQSPSPINS PHLNSNNT

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data



    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.97

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle