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Protein Overview: gi|81247622, gi|...

General Information:
Name(s) found: gi|82546211 [NCBI NR]
gi|81247622 [NCBI NR]
Description(s) found:
Found 3 descriptions.
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  • gi|82546211|ref|YP_410158.1| O2-independent coproporphyrinogen III oxidase [Shigella boydii Sb227] [NCBI NR]
  • gi|81247622|gb|ABB68330.1| O2-independent coproporphyrinogen III oxidase [Shigella boydii Sb227] [NCBI NR]
    • Organism: Shigella boydii Sb227
    Length: 459 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMSVQQIDW DLALIQKYNY SGPRYTSYPT ALEFSEDFGE QAFLQAVARY PERPLSLYVH  60
   61 IPFCHKLCYF CGCNKIVTRQ QHKADQYLDA LEQEIVHRAP LFAGRHVSQL HWGGGTPTYL 120
  121 NKAQISRLMK LLRENFQFNA DAEISIEVDP REIELDVLDH LRAEGFNRLS MGVQDFNKEV 180
  181 QRLVNREQDE EFIFALLNHA REIGFTSTNI DLIYGLPKQT PESFAFTLKR VAELNPDRLS 240
  241 VFNYAHLPTI FAAQRKIKDA DLPSPQQKLD ILQETIAFLT QSGYQFIGMD HFARPDDELA 300
  301 VAQREGVLHR NFQGYTTQGD TDLLGMGVSA ISMIGDCYAQ NQKELKQYYQ QVDEQGNALW 360
  361 RGIALTRDDC IRRDVIKSLI CNFRLDYAPI EKQWDLHFAD YFAEDLKLLA PLAKDGLVDV 420
  421 DEKGIQVTAK GRLLIRNICM CFDTYLRQKA RMQQFSRVI

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..459] PSI-BLAST 127.0 Coproporphyrinogen III oxidase (HemN) from Escherichia coli is a Radical SAM enzyme.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • coproporphyrinogen oxidase activity
    		•  2.62711845981655 bayes_pls_golite062009
  • biotin synthase activity
    		•  2.22585029668171 bayes_pls_golite062009
  • radical SAM enzyme activity
    		•  2.08127882819276 bayes_pls_golite062009
  • oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor
    		•  1.93818807823452 bayes_pls_golite062009
  • catalytic activity
    		•  1.85375915825216 bayes_pls_golite062009
  • sulfurtransferase activity
    		•  1.26112752511053 bayes_pls_golite062009
  • transferase activity, transferring sulfur-containing groups
    		•  0.35292941647096 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle