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Protein Overview: hrp-1

General Information:
Name(s) found: hrp-1 / CE39251 [WormBase]
Description(s) found:
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  • WBGene00001999 locus:hrp-1 Heterogeneous nuclear ribonucleoprotein A1 status:Confirmed UniProt:Q22037 protein_id:CCD71137.1 [WormBase]
  • gi|78771788|gb|ABB51186.1| Human hnrnp a1 homolog protein 1, isoform d [Caenorhabditis elegans] [NCBI NR]
  • gi|115532850|ref|NP_001040945.1| human HnRNP A1 homolog family member (hrp-1) [Caenorhabditis elegans] [NCBI NR]
  • CE39251 WBGene00001999 locus:hrp-1 status:Confirmed UniProt:Q336L4_CAEEL protein_id:ABB51186.1 [WormBase_C-elegans_193_07-31-2008_con_reversed.fasta]
  • CE39251 WBGene00001999 locus:hrp-1 status:Confirmed UniProt:Q336L4_CAEEL protein_id:ABB51186.1| [wormORF-contam.fasta]
  • CE39251 WBGene00001999 locus:hrp-1 status:Confirmed TR:Q336L4 protein_id:ABB51186.1 [wormpep160-contam.fasta]
  • Human hnrnp a1 homolog protein 1, isoform d [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • human HnRNP A1 homolog family member (hrp-1) [Caenorhabditis elegans] [nr-271106-contam.fasta]
  • CE39251 WBGene00001999 locus:hrp-1 status:Confirmed UniProt:Q22037 protein_id:ABB51186.1 [wormbase_c-elegans_2.11_01-10-2010_reversed.fasta]
  • [wormpep210-phg-orf-LaDeana-ecoli-contam.fasta.nr]
  • CE39251 WBGene00001999 locus:hrp-1 status:Confirmed UniProt:ROA1_CAEEL protein_id:ABB51186.1 [wormbase_c-elegans_197_11-26-2008_reversed.fasta]
  • CE39251 WBGene00001999 locus:hrp-1 status:Confirmed UniProt:Q22037 protein_id:CCD71137.1 [wormbase_c_elegans_ws231_03-13-2012_reversed.fasta]
  • CE39251 WBGene00001999 locus:hrp-1 status:Confirmed UniProt:Q22037 protein_id:CCD71137.1 Heterogeneous nuclear ribonucleoprotein A1 [wormpep246-ecoli-contam.fasta]
  • Isoform of Q22037, Isoform d of Heterogeneous nuclear ribonucleoprotein A1 OS=Caenorhabditis elegans GN=hrp-1 [CAEEL.fasta.20160308]
    • Organism: Caenorhabditis elegans
    Length: 347 amino acids

    Gene Ontology:
    Cellular Component: chromosome, telomeric region [IDALink to PubMed article]
    Biological Process: nematode larval development [IMPLink to PubMed article]
    positive regulation of growth rate [IMPLink to PubMed articleLink to PubMed article]
    embryonic development ending in birth or egg hatching [IMPLink to PubMed articleLink to PubMed article]
    growth [IMPLink to PubMed article]
    Molecular Function: nucleic acid binding [IEALink to PubMed article]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDVEIKAEN GSGDASLEPE NLRKIFVGGL TSNTTDDLMR EFYSQFGEIT DIIVMRDPTT  60
   61 KRSRGFGFVT FSGKTEVDAA MKQRPHIIDG KTVDPKRAVP RDDKNRSESN VSTKRLYVSG 120
  121 VREDHTEDML TEYFTKYGTV TKSEIILDKA TQKPRGFGFV TFDDHDSVDQ CVLQKSHMVN 180
  181 GHRCDVRKGL SKDEMSKAQM NRDRETRGGR SRDGQRGGYN GGGGGGGGWG GPAQRGGPGA 240
  241 YGGPGGGGQG GYGGGNYGGG WGQQGGGGQG GWGGPQQQQG GGGWGQQGGG GQGGWGGPQQ 300
  301 QQQGGWGGPQ QGGGGGGWGG QGQQQGGWGG QSGAQQWAHA QGGNRNY

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..204] PSI-BLAST 57.69897 Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI)
    2 View Details [205..347] FFAS03 2.02 Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.950788308762215 bayes_pls_golite062009
  • nucleic acid binding
    		•  0.29562225149076 bayes_pls_golite062009
    2 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle